PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC10G15060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 394aa MW: 42692.6 Da PI: 7.0211 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.7 | 1.4e-09 | 243 | 300 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +R+ +i+eLe+kv+ L++e ++L +l l+ ++ + ++ OPUNC10G15060.1 243 KRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMATQ 300 999******************************************9999887766665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.0E-16 | 239 | 303 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.565 | 241 | 304 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.5E-9 | 243 | 301 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.6E-9 | 243 | 298 | No hit | No description |
SuperFamily | SSF57959 | 1.34E-10 | 243 | 293 | No hit | No description |
CDD | cd14703 | 9.08E-22 | 244 | 293 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MNTTSTNELM MHRHVQAASY AAAPMPPQQG GKQRAPGLPP TPPPPAAVNS HSSHGDVCMD 60 DTARGLLPPR KAHRRSRSDV PFGYFQPLPP PSPKMEAGGW ALPGCGGAGD DLLNAYMSLE 120 GMGGADGLNN SDGDSRGSSM RTNGADSSEN ESEDYVGADS QALLWGGGEA AGKKRRNNAA 180 GETAARHARS LSMDSLMGKL SFAANGEPAK FSLEFGSGEF TPAEMKRIMA DEKLAEMALA 240 DPKRVKRVLA NRQSAARSKE RRMRYIAELE QKVQILQTEA TTLSAQLTLL QRDSSGMATQ 300 NNELKFRLQS MEQQAQLRDA LNEALTAEVQ RLKLAANEVG DTSSSSNLAH QIQLRCQNQM 360 LDLHKQQQQQ GEQIPFYQLE QPEQNGAARN HESK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108607 | 0.0 | AK108607.1 Oryza sativa Japonica Group cDNA clone:002-146-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613793.1 | 0.0 | transcription factor RF2a-like isoform X1 | ||||
TrEMBL | A0A0E0MA28 | 0.0 | A0A0E0MA28_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G15060.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3536 | 35 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38900.3 | 3e-69 | bZIP family protein |