PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G14260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 864aa MW: 90644.2 Da PI: 5.796 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 99.2 | 3.6e-31 | 146 | 230 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea OPUNC10G14260.1 146 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 230 8********************************************************************97..56668*******85 PP | |||||||
2 | trihelix | 111.6 | 4.8e-35 | 528 | 613 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a OPUNC10G14260.1 528 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 613 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0034 | 143 | 205 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.737 | 145 | 203 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.0E-21 | 145 | 231 | No hit | No description |
CDD | cd12203 | 4.30E-28 | 145 | 210 | No hit | No description |
SMART | SM00717 | 0.0046 | 525 | 587 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.399 | 527 | 585 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 527 | 584 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.5E-24 | 527 | 614 | No hit | No description |
CDD | cd12203 | 1.82E-29 | 528 | 592 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 864 aa Download sequence Send to blast |
MTGGPMHLWA PCVSGVLMRR EKGEAPDVLI IPSPPFPSGN TRGGGGGGGG SSMQQQQGGG 60 GVQQQFGAVA PEMSPFSPAG GGGGRISMAE AASPISSRPP APQQQQFDEL GASGGVGGGG 120 GGFDAEAMAA AAVGEEGASG GAGGNRWPRQ ETLALLKIRS DMDAAFRDAT LKGPLWEEVS 180 RKLAEEGYRR SAKKCKEKFE NVHKYYKRTK ESRAGRNDGK TYRFFTQLEA LHGTAGGGVA 240 VAPSPVTSLA PPATAAVGVS GVAGPSAVRA PAEPPPVGVA PVMGNVMSFS TSNTEEYSDE 300 EDSDDEGTED MGGGADERGK RKRMSEGGVS AGGGGGGSGK MMKFFEGLMK QVMERQEAMQ 360 QRFLEAIEKR EQDRMIREEA WRRQEMARLA REQEILAQER AMAASRDAAV VSFIQKITGQ 420 TIPMPSIVAP AITVMPPLAP APSQPPPPPH PTPIASAAPA PPPPSSQPPQ PPTSHSPQNT 480 RSPLPATPQP QQQQQSSMDI VMTPAETHDA GYDGSGGGGG GGQPSSSRWP KAEVHALIQL 540 RSNLDNRYQE AGPKGPLWEE ISAGMRRLGY NRSSKRCKEK WENINKYFKK VKESNKKRPE 600 DSKTCPYFHQ LDALYRNKAA LNSSSSAAAP ALPPPEHAEA ASAAVTIAAP ISQTPPPPQP 660 VTTKNGNGTS STNGNGGGAN GDGGGGSGGM QMQASNGSVV AGNKFFTGAA ATAAAAKKPE 720 DIMKEMMEQR PQPQPQLLQQ QQQQPAAAAN NAFNRTDGGG GVDSDNMDED DEEDYDDDDD 780 DDDDDDDVDG NKMQYEIQFQ RQQQQQHQHQ HHQPPPPPQH RHHQNVVRPN AAASAAAGNP 840 PGTAAPGTAA AATTTTGSFL AMVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 50 | SGNTRGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025296 | 0.0 | AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794483.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
Refseq | XP_025794484.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q39117 | 4e-67 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A0E0M9R0 | 0.0 | A0A0E0M9R0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G14260.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-49 | Trihelix family protein |