PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC10G12930.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 280aa MW: 28501.8 Da PI: 10.3418

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC10G12930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.1	1.7e-32	110	165	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr+++k+ OPUNC10G12930.1 110 PRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKR 165 679***********************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.4E-30	111	165	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.468	111	165	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	113	149	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-17	118	156	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MRRGSPWYDY YYYYSSSSYP GPRRGVPGAM SSSFLGSSSS SASSPLSYLT PPRPPPPPLL 60 IGQGYAAAAN GGVGGGGGVV GVPTGVEAVN AAPRQGGRHA GHPPLPRPPP RQCPRCGSAN 120 TKFCYYNNYS RTQPRYLCKA CRRHWTEGGT LRDVPVGGGR KNSKRGGGKA GAAAAKAATA 180 SSTAASTAHV VAPPPTSSSS FPDLLRQMLL SPATGAGGGG GYSIDLTAWQ QMATFSAPPQ 240 SATGDVGGVV GGTMAPDANC GGGGGVQLIR QNSRDKDQVK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109091	0.0	AK109091.1 Oryza sativa Japonica Group cDNA clone:002-155-A04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614315.1	4e-54	dof zinc finger protein 1-like
TrEMBL	A0A0E0M982	0.0	A0A0E0M982_ORYPU; Uncharacterized protein
STRING	OPUNC10G12930.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-18	Dof family protein