PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G08860.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 362aa    MW: 40800.6 Da    PI: 4.6434
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G08860.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34471382102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++ ++sws+ gnsfvv+d++ fa+ +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  OPUNC10G08860.2  47 FLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 131
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  OPUNC10G08860.2 132 TIKRRKP 138
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-6143136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.93E-3643136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDPAVAAAGG IVKEEMLESQ QQQDGGGGGG AAPRPMEGLH EVGPPPFLTK TYDLVEDPAT  60
DGVVSWSRAG NSFVVWDPHV FADLLLPRLF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQRHLL KTIKRRKPPS NAPPSQQQSL TSCLEVGEFG FEEEIDRLKR DKNILITEVV  180
KLRQEQQATK DHVKAMEGRL RAAEQKQVQM MGFLARAMRN PEFFQQLAQQ KEKRKELEDA  240
ISKKRRRPID NVPFYDPGET SQTEQLDSPY LFDSGVLNEF SEPGIPELEN LAVNIQDLGK  300
DKVDEERQNQ ANGQAELGDD FWAELLVEDF AGKEEQSELD GKIDGIDELA QQLGYLSSTS  360
PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-264513618120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKTIKRR
2232246KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444880.0AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876421.10.0heat stress transcription factor A-2c-like
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A0E0M7R80.0A0A0E0M7R8_ORYPU; Uncharacterized protein
STRINGOPUNC10G08860.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-114heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]