PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G08860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 376aa    MW: 42599.7 Da    PI: 4.7054
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G08860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.21.7e-30471522102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.....TEEE---SSBTTTTXTTSEEEEESXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.....gFkkvkdeekkskskekiweFkhksFkkgk 90 
                      Fl+k+y+++ed++++ ++sws+ gnsfvv+d++ fa+ +Lp+ Fkh+nf+SFvRQLn+Y      + k k+e + +k +++ weF+++ F +g+
  OPUNC10G08860.1  47 FLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYldgtrYWMKYKNEIGFRKVDPDRWEFANEGFLRGQ 140
                      9**********************************************************66333366666666665557*************** PP

                      XXXXXXXXXXXX CS
     HSF_DNA-bind  91 kellekikrkks 102
                      ++ll++ikr+k 
  OPUNC10G08860.1 141 RHLLKTIKRRKP 152
                      *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3543150IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-3243150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5343150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-134770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2847150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-138597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1398110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDPAVAAAGG IVKEEMLESQ QQQDGGGGGG AAPRPMEGLH EVGPPPFLTK TYDLVEDPAT  60
DGVVSWSRAG NSFVVWDPHV FADLLLPRLF KHNNFSSFVR QLNTYLDGTR YWMKYKNEIG  120
FRKVDPDRWE FANEGFLRGQ RHLLKTIKRR KPPSNAPPSQ QQSLTSCLEV GEFGFEEEID  180
RLKRDKNILI TEVVKLRQEQ QATKDHVKAM EGRLRAAEQK QVQMMGFLAR AMRNPEFFQQ  240
LAQQKEKRKE LEDAISKKRR RPIDNVPFYD PGETSQTEQL DSPYLFDSGV LNEFSEPGIP  300
ELENLAVNIQ DLGKDKVDEE RQNQANGQAE LGDDFWAELL VEDFAGKEEQ SELDGKIDGI  360
DELAQQLGYL SSTSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-234515018120Heat shock factor protein 1
5d5u_B6e-234515027129Heat shock factor protein 1
5d5v_B6e-234515027129Heat shock factor protein 1
5d5v_D6e-234515027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149LKTIKRR
2246260KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0276580.0AC027658.1 Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence.
GenBankAK0723910.0AK072391.1 Oryza sativa Japonica Group cDNA clone:J023077L03, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY3444880.0AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876421.10.0heat stress transcription factor A-2c-like
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A0E0M7R70.0A0A0E0M7R7_ORYPU; Uncharacterized protein
STRINGOPUNC10G08860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]