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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G08190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 24691.8 Da PI: 7.2964 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.6 | 1e-10 | 16 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGV + +grW+ I + kr+ +g +gt+eeAa a+++a +++ g OPUNC10G08190.1 16 KYKGVAR-TADGRWRGFITNkF-----GKRYGVGDHGTPEEAALAHDRAILAILG 64 8****95.559****8877744.....5*********************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-9 | 16 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-7 | 16 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.891 | 16 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-9 | 16 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0014 | 16 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.50E-15 | 16 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAGSGAGDGD VHARVKYKGV ARTADGRWRG FITNKFGKRY GVGDHGTPEE AALAHDRAIL 60 AILGAHASPA ALNFRAAFSD TELRFLRGPH APSRRAAGVI AAVMRGAAFD AELERFAARA 120 YDAHTDPELA LDVAAFRLAS RDADALAQPE RDAERAAFVA AARNKVHDAA WLRSYLQRRR 180 LVGATFEDEN RWPPVVPPPV VDVGDGFAGN ELVYLPYGSC HVDEMMITA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021893 | 0.0 | AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0M7I8 | 1e-162 | A0A0E0M7I8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G08190.1 | 1e-162 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15058 | 17 | 18 |