 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC10G08110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 351aa MW: 36635.7 Da PI: 6.4536 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC10G08110.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.9 | 2e-19 | 102 | 155 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe+ +++ e++++LA+ lgL+ rqV +WFqNrRa++k
OPUNC10G08110.1 102 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 155
456899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.8 | 4.6e-41 | 101 | 192 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+
OPUNC10G08110.1 101 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIV 192
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MRPAMASNGG MAASPFFPAN FLLQMQQPLP LHHQHLQDHA HGGGHHLLPP PPPSLSPFLP 60
DLAAMDAPPP PMYDASGGGD AASEDEEDGC GGGGGGGGGG EKKRRLSVEQ VRTLERSFES 120
GNKLEPERKA QLARALGLQP RQVAIWFQNR RARWKTKQLE KDFDALRRQL DAARAENDAL 180
LSLNSKLHAE IVALKGGAAA GGGGGSSCRQ EAASELINLN VKETEASCSN RSENSSEINL 240
DISRPAPPPP PSANESPVNH HRGDGGGGGI PFYASIGRGS TGGVDIDQLL LRGGHSPSPA 300
AVTTPPPKME LGTGNGGGDT AAAASFGGLL CGAVDEQPPF WPWADGHHHF H
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 149 | 157 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK287700 | 0.0 | AK287700.1 Oryza sativa Japonica Group cDNA, clone: J065130H05, full insert sequence. |
| GenBank | CT837749 | 0.0 | CT837749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence. |
