 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC10G07050.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 317aa MW: 33679 Da PI: 7.0899 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC10G07050.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 47.8 | 2.5e-15 | 96 | 147 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ +s++ + a+i+ A++Y+++L+
OPUNC10G07050.1 96 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YSQRGDQASIVGGAINYVRELE 147
79****************************...*******************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MALEAVVYSH GGHFGGYGGL MGGAPAAWDV FAAAGGGSWD DPGLFAASLD VMQDVDEWEV 60
DQHASSSSSK VAAAAAGKRK RRRAKAVKNR EEIESQRMTH IAVERNRRRQ MNEYLAVLRS 120
LMPPSYSQRG DQASIVGGAI NYVRELEQLL QTLEVKRNIK DHIDGAGAGG ESPSPFSGFF 180
AFPQYSISGH VGGSGGDARS RIVKPAETTT VAGGVVGGGA AIADIEASMV EGHASVKVQA 240
RRRPRQLIKL VAGLHQLGLT TLHLNVTTVA AMAMYSFSLK VEDGCKLGSV EEIATAVHEI 300
LERIQEEQAL ADAKTNL
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 77 | 82 | KRKRRR |
| 2 | 78 | 82 | RKRRR |
| 3 | 96 | 107 | RMTHIAVERNRR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK058809 | 0.0 | AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence. |
