PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G06860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 313aa    MW: 32771 Da    PI: 8.2262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G06860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.9e-19123172255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+++tae+Aa a++ a+ +l+g
  OPUNC10G06860.1 123 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEDAALAYDGAAFRLRG 172
                      59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.70E-29122182No hitNo description
PROSITE profilePS5103223.143123180IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22123181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-32123181IPR001471AP2/ERF domain
SMARTSM003807.3E-36123186IPR001471AP2/ERF domain
PfamPF008474.3E-13124172IPR001471AP2/ERF domain
PRINTSPR003671.1E-10124135IPR001471AP2/ERF domain
PRINTSPR003671.1E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDRQWRCLAA AASTSGSSKL PPLPMALGGS VEYGQLVHGS AAPFVVDAEQ QSLSPATAMV  60
LGAGWYNLVM PAQAAQLHHR LRRAVGTGGG GCGFGPAPCA MKRRGGMVGR LALVAPVPAP  120
AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTYDTAEDAA LAYDGAAFRL RGDAARLNFP  180
ELRRGGQHHA PPLSASVDAK ILQATTTADH AAAASPASAN TPPPQAVVKT EPGCCSVSEA  240
STTTTADAAD VSSTGSSPSP TPSNPGAAPP APAPPLPETM QQLDFTEAPW DEADGFALRR  300
YPSWEIDWDA ILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20119180163ATERF1
3gcc_A3e-20119180163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1073140.0AC107314.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence.
GenBankAC1345160.0AC134516.1 Oryza sativa Japonica Group chromosome 10 clone OJA1208D02, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613762.11e-147ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0E0M7150.0A0A0E0M715_ORYPU; Uncharacterized protein
STRINGOPUNC10G06860.10.0(Oryza punctata)
STRINGOPUNC10G06870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-32ERF family protein