PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 31687.2 Da PI: 8.2688

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC10G00220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	141	195	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k OPUNC10G00220.1 141 RKKLRLTKDQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 195 788899***********************************************98 PP
2	HD-ZIP_I/II	124.6	4.7e-40	141	229	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr + OPUNC10G00220.1 141 RKKLRLTKDQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 229 69*************************************************************************************9.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.22E-18	131	198	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.973	137	197	IPR001356	Homeobox domain
SMART	SM00389	1.5E-15	139	201	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-17	139	200	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-15	141	195	IPR001356	Homeobox domain
CDD	cd00086	1.24E-16	141	198	No hit	No description
PROSITE pattern	PS00027	0	172	195	IPR017970	Homeobox, conserved site
SMART	SM00340	1.9E-20	197	240	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.5E-10	197	230	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MYGSPCPHSP SPFFFLSISK LHILLHPSLS LPRASCMAQD DQDMGLALGL SLGSGAHNQR 60 EPPSQAACTL EPSLTLSLPA AVSDSGLTTT TPPPPLLVAA GVKVKREMRA QEEEYEYEYE 120 RALYSVQASS VVDDDEGCNS RKKLRLTKDQ SALLEDRFKE HSTLNPKQKV ALAKQLNLRP 180 RQVEVWFQNR RARTKLKQTE VDCELLKRCC ETLTEENRRL HRELQQLRAL SHPGFFMATT 240 LPAATLSICP SCERLAAAGA SPTADRTNNV KPPASHFFSP FAKSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	SRKKLRL
2	189	197	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098984	1e-109	FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661591.1	1e-103	PREDICTED: homeobox-leucine zipper protein HOX15-like
Swissprot	Q7G737	6e-96	HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBL	A0A0E0M4X8	0.0	A0A0E0M4X8_ORYPU; Uncharacterized protein
STRING	OPUNC10G00220.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-65	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]