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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC09G17780.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 338aa MW: 36529.1 Da PI: 6.9497 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC09G17780.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 37 | 8.6e-12 | 24 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...tse 74
+W+++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + +++
OPUNC09G17780.1 24 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcatenaaaaaatgkPGSNTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAAG 117
5*******************************9999999999**********9887788899******************99888776332355 PP
trihelix 75 ssstcpyfdqle 86
++++f +++
OPUNC09G17780.1 118 GGPSWRFFARMD 129
667899999986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MDVLPDAADA APLAAAAPPQ KRDEWSESGI VRLLEAYEAK WLLRNRAKLK WSDWVDIAHE 60 VSAHCATENA AAAAATGKPG SNTAKTPNQC KNKIESMKKR YRAESAAAAR AGPAAAGGGP 120 SWRFFARMDG LLKGPAGAGQ PQAELSNSID LRAPPPPAAK VEIDVDADFV NQLADAGTGA 180 LSELVNAYAN GSIQEKLEKV ENSGQVEGRA AESDVNVSSP RIKEANEDAE EVDKVWDMSK 240 KRKNTEFDIA KSIELLASSF LKIERARMDL YRETERMRVE ADIKKGEMEL KRTEIMAKTH 300 LQIAKLFAKR LKECSSKTGG SSSVTAEVDN HAKKGENG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G54390.1 | 1e-44 | sequence-specific DNA binding transcription factors |