PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G12930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 429aa    MW: 45870.8 Da    PI: 7.2263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G12930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05258277120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  OPUNC09G12930.1 258 FSCPVCFKTFNRYNNMQMHM 277
                      89*****************9 PP
2zf-C2H212.50.00045344364323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F  k + ++H +++
  OPUNC09G12930.1 344 CRKCGKAFAVKGDWRTHEKNC 364
                      *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38258280IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-6258277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64258285IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-6324362No hitNo description
Gene3DG3DSA:3.30.160.603.6E-5329362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621342362IPR007087Zinc finger, C2H2
SMARTSM0035582342362IPR015880Zinc finger, C2H2-like
SMARTSM00355220368391IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MENPYYASFL KNHHRRYCFS TPQSPSPLPA TGAYSSSSFP FFPTAGVTST TAATPTTAPP  60
SPPLREALPL LSLTPASRGT TAQERARQRG EDTVDDGAEE EWDEEDVPGS TASGYGGDRH  120
HQRRRRRGGR LFADLNTKAA GDPMDVEGSG SGCSADAAAA GDDADVTVAL HIGLPSPTAA  180
AAADLISGLS SAAGRSSSAR HDEEEDEAEE AGGASRDDGD GGDAVAPLGF ASTPIGRLNK  240
GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGIQPTAML  300
RLPCYCCAAG CRNNIDHPRA KPLKDFRTLQ THYKRKHGLK PFLCRKCGKA FAVKGDWRTH  360
EKNCGKLWYC LCGSEFKHKR SLKDHARAFG HGHGALGGAA ALDDDDDGAV SDLDHDSSST  420
APAPAPRSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6269400.0EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611033.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-125ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0E0M2P20.0A0A0E0M2P2_ORYPU; Uncharacterized protein
STRINGOPUNC09G12930.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]