PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 429aa MW: 45870.8 Da PI: 7.2263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G12930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	258	277	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OPUNC09G12930.1 258 FSCPVCFKTFNRYNNMQMHM 277 89*****************9 PP
2	zf-C2H2	12.5	0.00045	344	364	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ OPUNC09G12930.1 344 CRKCGKAFAVKGDWRTHEKNC 364 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.38	258	280	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-6	258	277	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	258	285	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	260	280	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.8E-6	324	362	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.6E-5	329	362	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.621	342	362	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	342	362	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	220	368	391	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MENPYYASFL KNHHRRYCFS TPQSPSPLPA TGAYSSSSFP FFPTAGVTST TAATPTTAPP 60 SPPLREALPL LSLTPASRGT TAQERARQRG EDTVDDGAEE EWDEEDVPGS TASGYGGDRH 120 HQRRRRRGGR LFADLNTKAA GDPMDVEGSG SGCSADAAAA GDDADVTVAL HIGLPSPTAA 180 AAADLISGLS SAAGRSSSAR HDEEEDEAEE AGGASRDDGD GGDAVAPLGF ASTPIGRLNK 240 GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGIQPTAML 300 RLPCYCCAAG CRNNIDHPRA KPLKDFRTLQ THYKRKHGLK PFLCRKCGKA FAVKGDWRTH 360 EKNCGKLWYC LCGSEFKHKR SLKDHARAFG HGHGALGGAA ALDDDDDGAV SDLDHDSSST 420 APAPAPRSL

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MENPYYASFL KNHHRRYCFS TPQSPSPLPA TGAYSSSSFP FFPTAGVTST TAATPTTAPP  60
SPPLREALPL LSLTPASRGT TAQERARQRG EDTVDDGAEE EWDEEDVPGS TASGYGGDRH  120
HQRRRRRGGR LFADLNTKAA GDPMDVEGSG SGCSADAAAA GDDADVTVAL HIGLPSPTAA  180
AAADLISGLS SAAGRSSSAR HDEEEDEAEE AGGASRDDGD GGDAVAPLGF ASTPIGRLNK  240
GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGIQPTAML  300
RLPCYCCAAG CRNNIDHPRA KPLKDFRTLQ THYKRKHGLK PFLCRKCGKA FAVKGDWRTH  360
EKNCGKLWYC LCGSEFKHKR SLKDHARAFG HGHGALGGAA ALDDDDDGAV SDLDHDSSST  420
APAPAPRSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF626940	0.0	EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611033.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-125	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0M2P2	0.0	A0A0E0M2P2_ORYPU; Uncharacterized protein
STRING	OPUNC09G12930.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-108	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]