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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G11110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 298aa MW: 32484.6 Da PI: 9.9551 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.2 | 2.3e-32 | 29 | 121 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+++++e+++++e+isw ++g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv ++ weF++ +F++g++ ll+ OPUNC09G11110.1 29 FLTKTHQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANGNFRRGEQGLLT 113 9*****************************************************************99.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 i+r+k + OPUNC09G11110.1 114 GIRRRKAT 121 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-35 | 24 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.2E-54 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.77E-32 | 25 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.0E-17 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.6E-29 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-17 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-17 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAAAAVAAGK QQQKGGGGRG GGGGGPAPFL TKTHQMVEES ATDEVISWGK EGRSFVVWKP 60 VEFARDLLPL HFKHCNFSSF VRQLNTYGFR KVVPDRWEFA NGNFRRGEQG LLTGIRRRKA 120 TTPQSSKSCG SGVNVAFPPP LPPLPLAPSA TTSSGNDRSS SSASSPPRAD ITSENEQLRK 180 DNQTLTTELA RARRHCEELL GFLSRFLDVR QLDLRMLMQE DMRAAAVGSG EQREQEHAQE 240 KCVKLFGVLL DDNHGVSTRK RARCEEAAAS ERPIKMIRIG EPWVSVPSSG PARCGGDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 1e-20 | 29 | 122 | 5 | 109 | Heat shock factor protein 2 |
5d8l_B | 1e-20 | 29 | 122 | 5 | 109 | Heat shock factor protein 2 |
5d8l_D | 1e-20 | 29 | 122 | 5 | 109 | Heat shock factor protein 2 |
5d8l_F | 1e-20 | 29 | 122 | 5 | 109 | Heat shock factor protein 2 |
5d8l_H | 1e-20 | 29 | 122 | 5 | 109 | Heat shock factor protein 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 24 | GGRGGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061433 | 0.0 | AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611859.1 | 1e-166 | heat stress transcription factor B-1 | ||||
Swissprot | Q67TP9 | 1e-167 | HSFB1_ORYSJ; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A0E0M205 | 0.0 | A0A0E0M205_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G11110.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 9e-54 | heat shock factor 4 |
Publications ? help Back to Top | |||
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