 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC09G11020.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 234aa MW: 25139.5 Da PI: 6.8057 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC09G11020.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 25.9 | 1.8e-08 | 154 | 194 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
OPUNC09G11020.1 154 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 194
699*****************87.....8****************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010500 | Biological Process | transmitting tissue development |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048462 | Biological Process | carpel formation |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MDFDLFNSYP EAQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPVSPMGTP SPQFSPPPQM 60
SVTTTTAGGG YQDQYNSMPA TYGAGAGVHQ LDFAMSSPGS DSGAPQGSSS SSEAMREMIF 120
HIAALQPVEI DPEAVRPPKR RNVRISKDPQ SVAARLRRER ISERIRILQR LVPGGTKMDT 180
ASMLDEAIHY VKFLKSQVQS LERAAAATGA AAHRAAAFGA AYPAALPLQH HAPW
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 135 | 140 | RPPKRR |
| 2 | 154 | 159 | RLRRER |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK060477 | 0.0 | AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence. |
| GenBank | AK070458 | 0.0 | AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence. |
| GenBank | AP005655 | 0.0 | AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07. |
| GenBank | AP006057 | 0.0 | AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04. |
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
