PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G10830.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 441aa    MW: 46763.6 Da    PI: 8.6719
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G10830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.62.4e-30192289298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++r+ws+ De+++L+Gli+++ k+g+   +++di ++++++++++s kvs +ql++K+rrLK+K++   ++ak+g+e +f ++hd++i++l+k
  OPUNC09G10830.1 192 RPSRVWSQADELIILRGLITYRGKRGMlpGSTQDIGKLHSYIRSQLSGKVSITQLSDKVRRLKQKYQLLATRAKTGRE-EFPTPHDHNIYQLAK 284
                      678************************888899***************************************999999.9************** PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  OPUNC09G10830.1 285 KVWGT 289
                      ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-26194288IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAPKRPAEEA DAAAGSASEG SDAEASAEAA RGHGSSPSPS KTPPPANPNP KSTAAPPSAV  60
APASGAGSDS GAASDSEGGA RREAASPRST GNPNRPRSIE VNSDSEDSAL PVASDAYADQ  120
AAASAGAGAD SDDGNASPLP PSRPSRAEAA AIKPISSRPM DPPPRRSAGG SEPRAKRPRS  180
AAVASSAEHS KRPSRVWSQA DELIILRGLI TYRGKRGMLP GSTQDIGKLH SYIRSQLSGK  240
VSITQLSDKV RRLKQKYQLL ATRAKTGREE FPTPHDHNIY QLAKKVWGTM SSAGEGGGSG  300
YDNADAGESE EEQYGRESDD DMESGRDNRH RKNQRSMPVT MANGNGTGIA AVNATVRGRG  360
EFEKGKDVYP YLWETVEELS SQHPSGAVFK KAFELLEGSK AQVMEEKLRK FRLTEMRQQL  420
RRMDLMKDTL SMVLDALEMA D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLA0A0E0M1X00.0A0A0E0M1X0_ORYPU; Uncharacterized protein
STRINGOPUNC09G10830.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-15DNA-binding storekeeper protein-related transcriptional regulator