 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC09G10660.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 411aa MW: 43185.1 Da PI: 6.7057 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC09G10660.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 35.6 | 1.6e-11 | 252 | 280 | 28 | 56 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
+++ LAk+l+L rqV vWFqNrRa+ k
OPUNC09G10660.2 252 KQKLALAKQLNLRPRQVEVWFQNRRARTK 280
567789*********************98 PP
|
| 2 | HD-ZIP_I/II | 90.8 | 1.7e-29 | 250 | 316 | 25 | 92 |
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
e+++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
OPUNC09G10660.2 250 EQKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 316
7899***********************************************************9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MELGLSLGEA MADAGRELVL GLGMGRREEA AAAAETGRRD HEVRRELEFG SRSSRCGGSS 60
PEPTVRLTLL PMVPGLGLPW PPPPPAASES SECDGWAWAD VICVVGWQGH LEASTRGFDV 120
NRPPSSGGGA GAAEEEQDDV AGAALSSSPN NSAGSFPMDD FSGHGLGGND AAPGGGGGGG 180
DRSCSRASDE DDGGSARKKL RLSKEQSAFL EESFKEHSTL NPVSLSSSHR SNTSSFPSPN 240
VASRLALCRE QKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE 300
ENRRLQKELA ELRALKTVHP FYMHLPATTL SMCPSCERVA SNSVPATAAS AAAPATAAQP 360
TAPSSGGIAA TSAAAAAPDH RPSSFAALFS SPRRFPLSVA PQAQAQPPTS S
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 274 | 282 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
