 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC09G09720.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 177aa MW: 19036.9 Da PI: 9.2392 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC09G09720.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.4 | 2.5e-05 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F ++ L H++ H
OPUNC09G09720.1 84 FTCTYCDKKFYSSQALGGHQNAH 106
89******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MLTTFSAFSQ ESRGVAAEAN SGGGGLLVLA PFSGRWCSSA PSRRRRPAAA AMDQHNGGGG 60
EEGDQLDLNL SLQPSQANEP PGYFTCTYCD KKFYSSQALG GHQNAHKFER SVAKRTRELA 120
AARRQQADEE ARRGTTKEPT SNASRGSAAG SSSYQRASPP EARRRDITEE IDLSLKL
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005747 | 1e-104 | AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17. |
| GenBank | AP014965 | 1e-104 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 1e-104 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
| GenBank | CT835819 | 1e-104 | CT835819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017B14, full insert sequence. |
