PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G05480.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 347aa    MW: 37093.2 Da    PI: 6.6109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G05480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.91.8e-27122182158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      +dDg++WrKYGqKe+ gs++pr+YYrCt++   gC+++k+v+r+++d ++++++Y+geH++
  OPUNC09G05480.1 122 VDDGHSWRKYGQKEILGSKHPRGYYRCTHRnsqGCMATKQVQRTDQDATLFDVIYHGEHTC 182
                      59***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-28111183IPR003657WRKY domain
PROSITE profilePS5081122.366117180IPR003657WRKY domain
SuperFamilySSF1182903.79E-25118182IPR003657WRKY domain
SMARTSM007749.7E-40122184IPR003657WRKY domain
PfamPF031061.8E-26123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MESMEGNGGG RLVVTELSHI KELVKQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS  60
GHFDGPRKRA AATGDLDPAT PSPLSDVSDL PFKATKKRKM STEKKRHQIR VSSTGGVENP  120
PVDDGHSWRK YGQKEILGSK HPRGYYRCTH RNSQGCMATK QVQRTDQDAT LFDVIYHGEH  180
TCVQKAVAAG AGNTQPETDT NAAQSHLHHL SSGLTVKVEG LTATEQPPPP PQQQQQQGGS  240
WNAMPPFCLS SPVSGLAPPE HNPFSAPSTP ENSPATSGSN HPSVAAPFHQ VAGDAAWRDA  300
ELQEVVSALV AATTTVQPAT AAMDADFSLD GFEFDPAFTI DITSFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21122182868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769300.0AY676930.1 Oryza sativa (indica cultivar-group) transcription factor WRKY74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651250.10.0probable WRKY transcription factor 30
TrEMBLA0A0E0M0190.0A0A0E0M019_ORYPU; Uncharacterized protein
STRINGOPUNC09G05480.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-38WRKY DNA-binding protein 46