PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G00900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 244aa MW: 26634.7 Da PI: 10.2092 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 33.7 | 9.8e-11 | 61 | 150 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 f r+wse De+ +L l +k+g+ ps + ++ + +++ s++ eK+rrL+ K+ k+ + + + ++ fels iW OPUNC09G00900.1 61 FARVWSEADELRILECLAAHVKKHGAPPSRSQLPEVLAGRGLDKEEFTVSEIYEKVRRLRSKYDKMLSG-----PRPVPGDIGRNRFELSTAIW 149 89***********************988886666666678888999*******************9998.....55677888899999999999 PP DUF573 97 g 97 g OPUNC09G00900.1 150 G 150 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.1E-14 | 61 | 150 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MATSRRRAAH PGSASAIPSS SSPADELPGR GRDAQGAERL EVEGSVPAGE KAKATKKPVA 60 FARVWSEADE LRILECLAAH VKKHGAPPSR SQLPEVLAGR GLDKEEFTVS EIYEKVRRLR 120 SKYDKMLSGP RPVPGDIGRN RFELSTAIWG NGNPIAPPPT GTRGRRDLQE LRALYPCLVD 180 AVERISASEC GGDVPKMGLA FIDDGTAVRM NALVKKQRVL ELKSMLKLDS MRKEVMRTLL 240 NIMD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005680 | 1e-145 | AP005680.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1352_A10. | |||
GenBank | AP005725 | 1e-145 | AP005725.4 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0025H18. | |||
GenBank | AP014965 | 1e-145 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610770.1 | 1e-132 | uncharacterized protein LOC4346437 | ||||
TrEMBL | A0A0E0LYF5 | 1e-176 | A0A0E0LYF5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G00900.1 | 1e-177 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14621 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-07 | DNA-binding storekeeper protein-related transcriptional regulator |