PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G00020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 307aa    MW: 34244.1 Da    PI: 7.7971
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G00020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57331.93.6e-10191278496
           DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      +  ws +D + +L +l   ++  g +ps +   +++ +++++s  +++ ++l +K+++LK++++++  +      p+ ++++d+  f+ls+k W
  OPUNC09G00020.1 191 RENWSFSDAVKILTALAAHRQAGGEQPSGH--TLFDELQHQLSReRFTARELYKKVKSLKDRYTDELYR----PPPARRRPQDTTLFDLSRKAW 278
                      568*****************9999888776..588999999885269*********************9....999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-827114IPR007592Protein of unknown function DUF573
PfamPF045044.6E-12192278IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAPTIPLPPT ADDEEEGPAR EKRRREKWPF SDQVKILTTL AAHRQAGEEL PSGRALFDEV  60
KQKLSLSRER FTARDLDKKV SHLRDRYLDE IYKPPAARRR PQDTTLFDLS RKAWPEFQQP  120
QVVHISNSGG PIVISSDDGS GARSGPIVIS SDGAGADSDA MVVSSNGSAP GPIVLSSDDE  180
EQEPARKKSC RENWSFSDAV KILTALAAHR QAGGEQPSGH TLFDELQHQL SRERFTAREL  240
YKKVKSLKDR YTDELYRPPP ARRRPQDTTL FDLSRKAWPE FHFQPQPQLE AAQISSPSSS  300
SSSSSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876294.19e-69uncharacterized protein LOC112936472
TrEMBLA0A0E0LY520.0A0A0E0LY52_ORYPU; Uncharacterized protein
STRINGOPUNC09G00020.10.0(Oryza punctata)