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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G21710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 389aa MW: 41591 Da PI: 8.1649 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.4 | 3.3e-07 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H OPUNC08G21710.1 205 HYCQVCGKGFKRDANLRMHMRAH 227 68*******************99 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00054 | 301 | 324 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k+Fs s+L++H + + OPUNC08G21710.1 301 YVCNRCGrKHFSVLSDLRTHEKHC 324 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.34E-6 | 204 | 230 | No hit | No description |
SMART | SM00355 | 0.0034 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 205 | 232 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.653 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 263 | 296 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 36 | 301 | 327 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MIPGGGGGGS VHAADGISPY LVQSQHGHGG GLDGMDDGAT FMGDQPHCHP LLYNLSVLKD 60 RVQQLHPLVG LAVAHNGHGH GPLDVSAADA IIQEIVAAAS SMMYAFQLFC DLGTAPTANI 120 NTAPPQETGA SIAAPAAVVK NKDHTADQME EDHLMQQQWQ QNGSGQHDYS SHAPPVFRSE 180 PAPGATATDT IIELDAAELL AKFTHYCQVC GKGFKRDANL RMHMRAHGDE YKSKAALSNP 240 TKLLAKGGGD DTMAAAAAAA RKYSCPQEGC RWNRRHAKFQ PLKSVICAKN HYKRSHCPKM 300 YVCNRCGRKH FSVLSDLRTH EKHCGDHRWL CSCGTSFSRK DKLIGHVALF AGHQPVMPLD 360 APRAKRLRSS SASVAGNIDD TTGIGMGAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063290 | 0.0 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. | |||
GenBank | AP004587 | 0.0 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. | |||
GenBank | AP005544 | 0.0 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649514.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
Swissprot | Q0WT24 | 3e-97 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A0E0LY07 | 0.0 | A0A0E0LY07_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G21710.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7441 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-97 | C2H2 family protein |