PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G20670.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 384aa MW: 40892.5 Da PI: 4.835

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G20670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.4	3e-35	44	135	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+++ll+ OPUNC08G20670.1 44 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLC 128 9***************************************************************99.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k OPUNC08G20670.1 129 EIHRRKV 135 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.5E-38	35	128	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-59	40	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.05E-35	41	133	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.1E-31	44	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-20	44	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-20	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	83	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-20	95	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MADQGAVAVA VAGGAATVEP SPPPPPAAEA GAVGQQQTSV PTPFLTKTYQ LVDDPAVDDV 60 ISWNDDGSTF VVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKIVPD RWEFANDCFR 120 RGERRLLCEI HRRKVTPPAP TTTTMGAVTV AAAIPMALPV TTRDGSPVLS GEEQVISSSS 180 SPEPPLMLPQ APSGSGSGGV ASGDMGDENE RLRRENAQLA RELSQMRKLC NNILLLMSKY 240 ASTQQLDAAN ASSAAGNNNC SGESAEAATP LPLPAVLDLM PSCPGAAAAP VSDNDEEIMS 300 AKLFGVSIGR KRMRHHDDDG DGGGGGGEVK AEPMDGRPHG KDDHSTETQA WPIYRPRPVY 360 QPIRACNGYE YDRAGSDQDG SNSS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MADQGAVAVA VAGGAATVEP SPPPPPAAEA GAVGQQQTSV PTPFLTKTYQ LVDDPAVDDV  60
ISWNDDGSTF VVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKIVPD RWEFANDCFR  120
RGERRLLCEI HRRKVTPPAP TTTTMGAVTV AAAIPMALPV TTRDGSPVLS GEEQVISSSS  180
SPEPPLMLPQ APSGSGSGGV ASGDMGDENE RLRRENAQLA RELSQMRKLC NNILLLMSKY  240
ASTQQLDAAN ASSAAGNNNC SGESAEAATP LPLPAVLDLM PSCPGAAAAP VSDNDEEIMS  300
AKLFGVSIGR KRMRHHDDDG DGGGGGGEVK AEPMDGRPHG KDDHSTETQA WPIYRPRPVY  360
QPIRACNGYE YDRAGSDQDG SNSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	2e-26	40	136	7	112	Heat shock factor protein 1
5hdn_A	2e-26	40	136	7	112	Heat shock factor protein 1
5hdn_B	2e-26	40	136	7	112	Heat shock factor protein 1
5hdn_C	2e-26	40	136	7	112	Heat shock factor protein 1
5hdn_D	2e-26	40	136	7	112	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101700	0.0	AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence.
GenBank	CU406354	0.0	CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBank	CU406884	0.0	CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025875859.1	0.0	heat stress transcription factor B-2b isoform X2
Swissprot	Q6Z9C8	0.0	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A0E0LXM8	0.0	A0A0E0LXM8_ORYPU; Uncharacterized protein
STRING	OPUNC08G20670.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	6e-65	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]