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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC08G19670.6 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 136aa MW: 14825 Da PI: 5.3604 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC08G19670.6 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 43.8 | 3.3e-14 | 43 | 76 | 18 | 51 |
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyeyss 51
g++KK +ELSvLCd+ev +++f + g lye++s
OPUNC08G19670.6 43 RGMFKKVYELSVLCDTEVGLVVFFPAGSLYEFAS 76
59******************************86 PP
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| 2 | K-box | 16.5 | 3.6e-07 | 85 | 114 | 42 | 71 |
K-box 42 dLesLslkeLqqLeqqLekslkkiRskKne 71
++++L++ eL+ Le+++ ++l+ +++k +
OPUNC08G19670.6 85 NVNELNIAELRGLEEAMTNALTVVKNKLMM 114
5799********************988654 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001708 | Biological Process | cell fate specification |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009611 | Biological Process | response to wounding |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0048833 | Biological Process | specification of floral organ number |
| GO:0071486 | Biological Process | cellular response to high light intensity |
| GO:0071492 | Biological Process | cellular response to UV-A |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 136 aa
Download sequence Send
to blast |
MEEEVRTPPA AATVAAEGGG GGGKKNRKRG KVELRRIEDR TSRGMFKKVY ELSVLCDTEV 60
GLVVFFPAGS LYEFASSTSS VLESNVNELN IAELRGLEEA MTNALTVVKN KLMMKVAGVL 120
PQSEKKSCWI SEPDQE
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242980 | 6e-67 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |
| GenBank | DQ512367 | 6e-67 | DQ512367.1 Triticum aestivum MADS-box transcription factor TaAGL12 (AGL12) mRNA, partial cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
Plant Physiol., 2007. 145(4): p. 1484-94
[PMID:17951465]
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