PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G19080.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 401aa MW: 41621.1 Da PI: 5.8195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G19080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.5e-09	220	267	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq OPUNC08G19080.1 220 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 267 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.78E-10	214	271	No hit	No description
SuperFamily	SSF47459	2.36E-16	214	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-16	216	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.301	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	220	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-10	222	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDGGVGGGDY ISSLLSSSPR LDFGLLPTGG AGVPVLDGVV AAAAAGAGGG DCLEKLCGDP 60 GFAERAARLS SFNNGGGGQR YGGAGLFGMP PPAPAASNGD FAGGGSREAS SVSDPASGAM 120 KDAANAKKRK AAAAGGGKGK GKEAPVGEEK ESDGKRSKTG DGERKESSVK PKAEQAGSDS 180 SVEDGGGGGQ KQGKGKNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ 240 DLVPGCNKVI GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLQKDMFQAC 300 GPSASSVFSL ESSNSAFPFA EQGDVFQQFA QNSMESQCTL NQLDLALSQA TNAAQYAFQD 360 GTAGANLQQR NFWEDDLQSV FHIENGQSQE NGVSAPNFHG W

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDGGVGGGDY ISSLLSSSPR LDFGLLPTGG AGVPVLDGVV AAAAAGAGGG DCLEKLCGDP  60
GFAERAARLS SFNNGGGGQR YGGAGLFGMP PPAPAASNGD FAGGGSREAS SVSDPASGAM  120
KDAANAKKRK AAAAGGGKGK GKEAPVGEEK ESDGKRSKTG DGERKESSVK PKAEQAGSDS  180
SVEDGGGGGQ KQGKGKNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ  240
DLVPGCNKVI GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLQKDMFQAC  300
GPSASSVFSL ESSNSAFPFA EQGDVFQQFA QNSMESQCTL NQLDLALSQA TNAAQYAFQD  360
GTAGANLQQR NFWEDDLQSV FHIENGQSQE NGVSAPNFHG W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072041	0.0	AK072041.1 Oryza sativa Japonica Group cDNA clone:J013105J01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648582.1	0.0	transcription factor BHLH094-like
TrEMBL	A0A0E0LX20	0.0	A0A0E0LX20_ORYPU; Uncharacterized protein
STRING	OPUNC08G19080.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	1e-52	bHLH family protein