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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC08G19080.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 401aa MW: 41621.1 Da PI: 5.8195 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC08G19080.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 28.2 | 3.5e-09 | 220 | 267 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq
OPUNC08G19080.1 220 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 267
8*************************9....677*****************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MDGGVGGGDY ISSLLSSSPR LDFGLLPTGG AGVPVLDGVV AAAAAGAGGG DCLEKLCGDP 60 GFAERAARLS SFNNGGGGQR YGGAGLFGMP PPAPAASNGD FAGGGSREAS SVSDPASGAM 120 KDAANAKKRK AAAAGGGKGK GKEAPVGEEK ESDGKRSKTG DGERKESSVK PKAEQAGSDS 180 SVEDGGGGGQ KQGKGKNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ 240 DLVPGCNKVI GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLQKDMFQAC 300 GPSASSVFSL ESSNSAFPFA EQGDVFQQFA QNSMESQCTL NQLDLALSQA TNAAQYAFQD 360 GTAGANLQQR NFWEDDLQSV FHIENGQSQE NGVSAPNFHG W
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK072041 | 0.0 | AK072041.1 Oryza sativa Japonica Group cDNA clone:J013105J01, full insert sequence. |