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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC08G18940.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 191aa MW: 20570.7 Da PI: 9.1349 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC08G18940.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 48.7 | 1.9e-15 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
g +GVr++ +grW+AeIr+p+ r+r ++g+f ++ Aa a++aa +++g
OPUNC08G18940.1 12 GLRGVRRRL-WGRWAAEIRVPRG---RARLWIGTFPSPTTAALAYDAALYCFHG 61
579***877.**********943...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 191 aa
Download sequence Send
to blast |
MVPPAHAPKN LGLRGVRRRL WGRWAAEIRV PRGRARLWIG TFPSPTTAAL AYDAALYCFH 60 GGAPPGNRAF NFPYAPRLRI DDRRRHALTL GHVRAIAERY AHDVGSVLFR PLPPALPIAA 120 PVPVFAVAAT PMVAAPAPAV ANHAAAAATD PYYCNEPDTT TDEDVMAAAD RLLSMDIEEV 180 AALIAIVQQG E
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108208 | 1e-130 | AK108208.1 Oryza sativa Japonica Group cDNA clone:002-140-D07, full insert sequence. |
GenBank | AP003865 | 1e-130 | AP003865.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1081_B12. |
GenBank | AP005509 | 1e-130 | AP005509.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1003_A09. |
GenBank | AP014964 | 1e-130 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | CP012616 | 1e-130 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |