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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC08G18260.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 90aa MW: 10033.7 Da PI: 11.0338 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC08G18260.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 87.6 | 6.9e-28 | 25 | 74 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye++s
OPUNC08G18260.1 25 RIEDRTSRQVRFSKRRSGMFKKAHELSVLCDAEVALVVFSPAGRLYEFAS 74
8***********************************************86 PP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-18 | 18 | 75 | 3 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK242980 | 3e-83 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |
GenBank | AP005529 | 3e-83 | AP005529.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0702E04. |
GenBank | AP014964 | 3e-83 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | AY177701 | 3e-83 | AY177701.1 Oryza sativa (japonica cultivar-group) transcription factor MADS37 mRNA, partial cds. |
Publications
? help Back to Top |
- Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] - Bai Z, et al.
The impact and origin of copy number variations in the Oryza species. BMC Genomics, 2016. 17: p. 261 [PMID:27025496] - Rathnakumar K, et al.
Angiopoietin-2 mediates thrombin-induced monocyte adhesion and endothelial permeability. J. Thromb. Haemost., 2016. 14(8): p. 1655-67 [PMID:27241812] - Shibaya T, et al.
Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol., 2016. 57(9): p. 1828-38 [PMID:27318280] - Balanzà V,Roig-Villanova I,Di Marzo M,Masiero S,Colombo L
Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks. Development, 2016. 143(18): p. 3372-81 [PMID:27510967] - Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice. Front Plant Sci, 2016. 7: p. 1270 [PMID:27621738] - Ehlers K, et al.
The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana. PLoS ONE, 2016. 11(10): p. e0165075 [PMID:27776173] - Sehra B,Franks RG
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] - Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]
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