PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 444aa MW: 47463.9 Da PI: 6.4152

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G17810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	266	285	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OPUNC08G17810.1 266 FSCPVCFKTFNRYNNMQMHM 285 89*****************9 PP
2	zf-C2H2	12.4	0.00047	352	372	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ OPUNC08G17810.1 352 CRKCGKAFAVKGDWRTHEKNC 372 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.38	266	288	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.7E-6	266	285	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	266	293	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	268	288	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.78E-6	334	370	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	337	370	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	350	370	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	350	370	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	376	399	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MENPYTSFFK NPYYYYCTSA SSFPGAPAAA AHLPPPLPPP YTALYPTAGG VGAHHHQYPP 60 AAFFHPPPVH QQQQVVVDST PPSPPLREAL PLLSLSPTPA RRGVGAVDAA ADSDSDDDGG 120 DCCYHLQEEG AGSTTTPAAA ARVPLFADLN CMPSCCDDDG DPMDVEVAGT TADIDAAVAL 180 RIGLPAGGGG TEADLLSGLS SRAGAGVEHE EEEEEEDCKV DGGGSGSGGD DEVVPLGFSS 240 TPIGKLNKGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR 300 GVQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH YKRKHGLKPF LCRKCGKAFA 360 VKGDWRTHEK NCGKLWYCLC GSEFKHKRSL KDHARAFGHA HAAGLDADDD DGAVSDVDHH 420 SSSSYYAAAR SSMASSSSSL QPPR

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MENPYTSFFK NPYYYYCTSA SSFPGAPAAA AHLPPPLPPP YTALYPTAGG VGAHHHQYPP  60
AAFFHPPPVH QQQQVVVDST PPSPPLREAL PLLSLSPTPA RRGVGAVDAA ADSDSDDDGG  120
DCCYHLQEEG AGSTTTPAAA ARVPLFADLN CMPSCCDDDG DPMDVEVAGT TADIDAAVAL  180
RIGLPAGGGG TEADLLSGLS SRAGAGVEHE EEEEEEDCKV DGGGSGSGGD DEVVPLGFSS  240
TPIGKLNKGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR  300
GVQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH YKRKHGLKPF LCRKCGKAFA  360
VKGDWRTHEK NCGKLWYCLC GSEFKHKRSL KDHARAFGHA HAAGLDADDD DGAVSDVDHH  420
SSSSYYAAAR SSMASSSSSL QPPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287566	0.0	AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649538.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-116	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0LWM1	0.0	A0A0E0LWM1_ORYPU; Uncharacterized protein
STRING	OPUNC08G17810.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-105	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]