PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC08G17110.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 443aa MW: 48429.4 Da PI: 4.6935 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.7 | 3.1e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l +s OPUNC08G17110.4 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDVALVMFSPSGRLNHFS 58 79********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.506 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.38E-37 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-29 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 443 aa Download sequence Send to blast |
MGRVKLPIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDVALVMFSP SGRLNHFSGR 60 RGVEDVILRY MNLSEHDRGE AIQNREYLIS MLQRLKRESD MATQLANPGA LNEKIEEIQQ 120 EIYSSQQQLQ ITEDRLRYEQ DDDTLSEAKT LLQICSNPIH EHTLCSCSCR MFEPDPAAFG 180 TSSEIDGCEK YLMELLTRVV ERKVQANDEM RLNCRILNKT VEIQTRTKSR ANPFAQNSEQ 240 ISSEKIILQN NLLSSHMAPF DATAAAMHGA DGTQMYVNQA DGMGTFGGDA AMWGPDGGAD 300 PGHPMFSASD PLIYLRDHDV YDANSQVAGL HGGDPCAAGG GAAAAAGCVD DIAGGHAAAA 360 DAWRQAYTCT ELLSTLIPTT PFPLMPHCLG PEDQYLSMEH GMVAAAQEPM EASTASCSYV 420 PSDETTGTPV MAYDSNPPPA NIA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FM956504 | 0.0 | FM956504.1 Oryza sativa Japonica Group mRNA for MADS62 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883256.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A0E0LWC5 | 0.0 | A0A0E0LWC5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G17110.4 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4953 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77980.1 | 1e-53 | AGAMOUS-like 66 |