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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC08G16410.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 361aa MW: 37654.2 Da PI: 5.5807 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC08G16410.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 42.7 | 9.8e-14 | 139 | 189 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++Y+k++
OPUNC08G16410.1 139 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 189
79****************************...9*****************997 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MALEAVVFSE GYYFGCGGGA MAAEAAAGGA WSWSHGYGGG VDQGKGVMEL VVDDGVNACW 60 DGGGASSSPV MAAVPGFIEE PDGGNSSVAD AALPPPPPEH GGAAVVGQDG AAAAPAPAAG 120 RRKRRRARTV KNREEVESQR MTHIAVERNR RKQMNEYLAV LRSLMPASYV QRGDQASIIG 180 GAINYVKEME QLLQSLEAQR HARGARTDGV VAAAAAALPF AGFFTFPQYS MSAAPTTTTT 240 VAAAATENCN AVAGADDDAD ASGSKPSSVA DIEVTMVESH ANLKVLSRRR PRQLLRMVTG 300 LQHHRLAVLH LNVASAGHMA LYSLSLKVED DCQLTSVDDI AAAVHGIVEA IEQEQQQQSC 360 S
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 121 | 125 | RKRRR |
2 | 139 | 150 | RMTHIAVERNRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK107626 | 0.0 | AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence. |
GenBank | HQ858861 | 0.0 | HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds. |