PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G15560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 372aa    MW: 41045.6 Da    PI: 10.0946
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G15560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34241202103
                      HHHHHHHHHCTGGGTTTSEES.SSS...SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng...nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                      Fl+k+y++++d+++++++sw  ++g   +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k
  OPUNC08G15560.1  24 FLTKTYQLVDDPATDHVVSWGdDDGesvSSFVVWRPPEFASDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEK 108
                      9*******************9555577799***************************************999.........************* PP

                      XXXXXXXXXXXX CS
     HSF_DNA-bind  92 ellekikrkkse 103
                      +ll++i+r+ks+
  OPUNC08G15560.1 109 QLLCEIHRRKSA 120
                      *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3514112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5420117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3021117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2924117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-122447IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-127991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEWEDENDAA RQKAAASSVV PAPFLTKTYQ LVDDPATDHV VSWGDDDGES VSSFVVWRPP  60
EFASDILPNY FKHSNFSSFV RQLNTYGFRK VVPERWEFAN EFFRKGEKQL LCEIHRRKSA  120
AATWPPFPPP PPPRFFAPRH FAAGAFFRHG DGILHGLGAL VTTTERRHWF ERAALPLAPS  180
SRLLALGPVI APAPRCGRAA ATPAEEALME EKDRLRRGNA ALVQELAHMR KLYSDIIYFV  240
QNHVRPVVPS PAVLHGLGIL RPPPKSGKAP AGEVRDASGR SATSSSSLTV AEDQPTLALR  300
LPRTTEKIIN EVAGGSTKLF GVHLSRADEQ TSSGASRKRS PLQDQQPPTS PARKRTLVVE  360
HSELRLSIVS PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211411720129Heat shock factor protein 1
5d5v_B1e-211411720129Heat shock factor protein 1
5d5v_D1e-211411720129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046930.0AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649314.10.0putative heat stress transcription factor B-4a
SwissprotQ6Z9R80.0HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBLA0A0E0LVT20.0A0A0E0LVT2_ORYPU; Uncharacterized protein
STRINGOPUNC08G15560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-77heat shock transcription factor B4