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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC08G06740.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
WRKY |
| Protein Properties |
Length: 285aa MW: 29746.7 Da PI: 10.6009 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC08G06740.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98 | 5.9e-31 | 224 | 282 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+y+WrKYGqK++kgs++pr+YYrC+s gCp++k+ver+a+dp ++++tYeg+H+h+
OPUNC08G06740.1 224 ADEYSWRKYGQKPIKGSPYPRGYYRCSSVkGCPARKHVERAADDPATLVVTYEGDHRHS 282
69*************************988****************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MAVDLMGFSP RGGCPSVEKE QLAFQEAAAA GLRSLELLVS SLSGGERRPQ PLEEIADQAV 60
FRFRKVISIL DRTGHARFRR GPVVGAAAAE AASAASPSSS PVSPLPPVTT QPAAVKSLTL 120
DFTNPAKVAA ASVTSTSFFS SVTAGGDGSV SKGRSLVSSG KPPLAGGVKR KHPHPPCAGG 180
DGHGAGAAHA HAHGGCHCSK KRKHRVRRTV RVPAASARVA DIPADEYSWR KYGQKPIKGS 240
PYPRGYYRCS SVKGCPARKH VERAADDPAT LVVTYEGDHR HSPPA
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004648 | 0.0 | AP004648.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_H02. |
| GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| Publications
? help Back to Top |
- Haas BJ, et al.
Full-length messenger RNA sequences greatly improve genome annotation.
Genome Biol., 2002. 3(6): p. RESEARCH0029
[PMID:12093376] - Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
Plant Methods, 2010. 6: p. 25
[PMID:21108821] - Brand LH, et al.
Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
PLoS ONE, 2013. 8(10): p. e75177
[PMID:24146751] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ali MA,Wieczorek K,Kreil DP,Bohlmann H
The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
PLoS ONE, 2014. 9(7): p. e102360
[PMID:25033038] - Jiang CH, et al.
Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
J. Exp. Bot., 2016. 67(1): p. 157-74
[PMID:26433201] - Ali MA, et al.
Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
J. Plant Physiol., 2018. 226: p. 12-21
[PMID:29689430]
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