PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G04650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 397aa    MW: 40854.8 Da    PI: 6.5558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G04650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000192823211054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  OPUNC08G04650.1 282 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 321
                      566677777778888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-12271341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.256272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-9275343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.37E-5275325No hitNo description
SMARTSM003530.0036278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MADHQEMIHA TASQAAMYGA GAAASGATTA TGGHGGGDWW SAAVSSCSAP LPETMQVFGG  60
WSAGVVDGGN TSRSAGNTAS SESPGSLATG SSITFQEPAG GGVADPAAIA VHAQTVAGGG  120
GGWNQQPFLD GSGFHGYMSS SRNDHTNHHH QINTPSLMSH SSSNNSVMLQ DHHHDQNYQF  180
LSNLGFELLS SPTSPYGGGG FRSSLLRSLT EPAAAKPNNS PGFQQQQQPA MNLQPPAAAG  240
REPLHFTNST APFWNLSSGF AVAAEGAGAS PAQTTPASLA NKVRKEKLGD RVTALQQLVS  300
PFGKTDTASV LHETIEYIKF LHDQVGALSA PYLKNRQQVP HLKNSGDSDG GGGGEATAAS  360
KRDLTGRGLC LVPISSTFAV ASETPVDFWT PFGAAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-137CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0LRX20.0A0A0E0LRX2_ORYPU; Uncharacterized protein
STRINGOPUNC08G04650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-36bHLH family protein