PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC08G04650.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 397aa MW: 40854.8 Da PI: 6.5558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G04650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	282	321	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++ L++l+ + +K + a++L +++eYIk L OPUNC08G04650.1 282 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 321 566677777778888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-12	271	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.256	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-9	275	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.37E-5	275	325	No hit	No description
SMART	SM00353	0.0036	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MADHQEMIHA TASQAAMYGA GAAASGATTA TGGHGGGDWW SAAVSSCSAP LPETMQVFGG 60 WSAGVVDGGN TSRSAGNTAS SESPGSLATG SSITFQEPAG GGVADPAAIA VHAQTVAGGG 120 GGWNQQPFLD GSGFHGYMSS SRNDHTNHHH QINTPSLMSH SSSNNSVMLQ DHHHDQNYQF 180 LSNLGFELLS SPTSPYGGGG FRSSLLRSLT EPAAAKPNNS PGFQQQQQPA MNLQPPAAAG 240 REPLHFTNST APFWNLSSGF AVAAEGAGAS PAQTTPASLA NKVRKEKLGD RVTALQQLVS 300 PFGKTDTASV LHETIEYIKF LHDQVGALSA PYLKNRQQVP HLKNSGDSDG GGGGEATAAS 360 KRDLTGRGLC LVPISSTFAV ASETPVDFWT PFGAAFR

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MADHQEMIHA TASQAAMYGA GAAASGATTA TGGHGGGDWW SAAVSSCSAP LPETMQVFGG  60
WSAGVVDGGN TSRSAGNTAS SESPGSLATG SSITFQEPAG GGVADPAAIA VHAQTVAGGG  120
GGWNQQPFLD GSGFHGYMSS SRNDHTNHHH QINTPSLMSH SSSNNSVMLQ DHHHDQNYQF  180
LSNLGFELLS SPTSPYGGGG FRSSLLRSLT EPAAAKPNNS PGFQQQQQPA MNLQPPAAAG  240
REPLHFTNST APFWNLSSGF AVAAEGAGAS PAQTTPASLA NKVRKEKLGD RVTALQQLVS  300
PFGKTDTASV LHETIEYIKF LHDQVGALSA PYLKNRQQVP HLKNSGDSDG GGGGEATAAS  360
KRDLTGRGLC LVPISSTFAV ASETPVDFWT PFGAAFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	1e-137	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648821.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	A0A0E0LRX2	0.0	A0A0E0LRX2_ORYPU; Uncharacterized protein
STRING	OPUNC08G04650.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-36	bHLH family protein