PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G03420.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 360aa    MW: 37728.7 Da    PI: 7.2689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G03420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-1089114127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f++ GtC+y  +C+FaHg+
  OPUNC08G03420.1  89 FKTKLCCKFRA-GTCPYVTNCNFAHGM 114
                      69*********.*************95 PP
2zf-CCCH18.24.5e-06164189126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd C+F H+
  OPUNC08G03420.1 164 YKGRHCKKFYTEEGCPYGDACTFLHD 189
                      78888********************7 PP
3zf-CCCH43.45.7e-14239264126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  OPUNC08G03420.1 239 WKTRICNKWEMTGYCPFGSKCHFAHG 264
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-886119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-1486121IPR000571Zinc finger, CCCH-type
SMARTSM003560.001488114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02888115IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-789114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7163191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629163191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8163191IPR000571Zinc finger, CCCH-type
SMARTSM003560.3163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-17233268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-10234269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422238266IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9238265IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11239264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAAAAQGGDA GIWATEDDYN SQWNADGGGD RPSSRAGSEQ  60
PPPGKKSRGG GGEVGGNSSK SRAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHGMEELRKP  120
PPNWQEIVAA HEEATETREE HQIPIMTSSG PAPGDAGGGS GRAYKGRHCK KFYTEEGCPY  180
GDACTFLHDE QSKARESVAI SLSPSVGGGG GGGGGSYNSA AVAASAAAAS GPMQKPSNWK  240
TRICNKWEMT GYCPFGSKCH FAHGAAELHK YGGGLVDIDS RDAAATPDSK QAAVSAKAPA  300
ETAAASTAVP PHADVYHLGV QVQRSTIANP RSGQVQRPIQ KWKGPDKISR IYGDWIDETE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198349.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0E0LRH40.0A0A0E0LRH4_ORYPU; Uncharacterized protein
STRINGOPUNC08G03420.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-94C3H family protein