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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G02070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 953aa MW: 105064 Da PI: 8.5728 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.2e-07 | 314 | 334 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G C++G++C++ H+ OPUNC08G02070.1 314 PCHDFVK-GRCSRGANCRYVHD 334 8******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.018 | 225 | 250 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 229 | 251 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 229 | 249 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 309 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 312 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 314 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 368 | 395 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-7 | 369 | 393 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-5 | 369 | 394 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 372 | 394 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 953 aa Download sequence Send to blast |
MTGETRKEQS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DLLPSQDFGH DNDKQIGESV 60 NLKSAVSMHH GSTGHEQDRA DGLNKDIKER SSKASSERLP LRMGDEDHNK NDWHNRGFEK 120 AAGNQGMSRY ADDRRRGDGW GTTLSRGYSS RMSSSGPDAW KRSRSPLSPR GGWNRSRRNR 180 SRSRSRSRSR SIGRGRGRSR SRSRSPYFSD RGSEWRVERG RSSGGPALPC RDFVAGRCRR 240 GSNCRFPHED GVRRQFDEHY PVDSRERYGH QNRDFMDPRE QDDYLRSRPP RGGHYDEGTW 300 ERSEPRREYR STMPCHDFVK GRCSRGANCR YVHDDSTSHG GWRDEVRDNA IGRSGPDSSY 360 GNRTEHRRTN KNPCKFFANG GCRRGQNCPY LHEEASQSQM GLGAPDEPLG YTGGPTRGDY 420 LSWSEQNNSV QASSHVLSRD DRENPVPQGT GRNDSRYENK NRHPKDAGSS QYQIFPQDDF 480 GSIGQNKPEI AASQLPQFIP SVQTGTESIN IDKVSDMGGQ SGPGTVGDLS MQIGMHSANL 540 LGGQNLGQKA ESQDAISQIS AAPSLPGATQ LQNTTSSVPL NSQVQQSDFS LHPNRQDQFA 600 VPLANTNNSA PSMQSQPVAP YMGHSQHGYI MGAQSLPDLS VHNGHIFNVG QVPQNLPTIV 660 HAEQNQATSD TPNLGRDSGG QSLQNTHNFQ PVAPNEQTQS QTLQGLSVVA SSSSVDMAGA 720 PLSHNAVSSQ EEVRRVTASL AQYFVPSLTA DTSGLQSSQP DPNSSLMNNS SAAPQAVQPN 780 HWPWLQQAGM VQPSHIVPSE QPAPQTFQAP MAAGSSNGNP LLLPHSVALT GPAAALATNE 840 TTTAENKKEE PKDTDAEANE DGENKKSKDS KALKMFKLAL ADFVKDALKP TWKEGQMSRE 900 VHKTIVKKVV DKVTTTVENT PQTKEKIDIY MSYSREKLNK LVQAYVGKYA KKD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 203 | RGRGRSRSRSR |
2 | 195 | 203 | RGRSRSRSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100455 | 0.0 | AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650360.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_025883327.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A0E0LR00 | 0.0 | A0A0E0LR00_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G02070.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-09 | C3H family protein |
Publications ? help Back to Top | |||
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