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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC08G01110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 387aa MW: 41397 Da PI: 6.9338 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC08G01110.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.3 | 2.5e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
OPUNC08G01110.1 11 VPPGFRFHPTEEELLNYYLRKKVASEQIDL-DVIRDVDLNKLEPWDIQErcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103
69****************************.9***************963444443456*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ + +g++ktLvfykgrap+g+k+dW+mheyrl
OPUNC08G01110.1 104 IYN-AVHRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
***.8899***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEQIDL DVIRDVDLNK LEPWDIQERC 60
KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVHR IGMRKTLVFY 120
KGRAPHGQKS DWIMHEYRLD DPAAADTATP TVTAAASAAA MAASDAGQED GWVVCRVFKK 180
KHHHKEAGSG GGKHGDGGGG GAKAAHAYSS SDDALDQILQ YMGRSCKQEH ELPSPQASGG 240
ASRPASRYLR PIDTVLGGHG FMKLPPLESP SAATALSSTP STGGDAASSA AAADHLLLHH 300
HHRTDWAMMD RLVASHLNGN PDAPDDQLCF DAADDDGLAY YSAAATRLLG GGNGGAIGSD 360
DDLWSFARSA APPPSAATPE RLSHVAL
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-47 | 8 | 181 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-47 | 8 | 181 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-47 | 8 | 181 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-47 | 8 | 181 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 2e-47 | 8 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 1e-47 | 8 | 181 | 14 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 1e-47 | 8 | 181 | 14 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 190 | 198 | GGKHGDGGG |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JN634071 | 0.0 | JN634071.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 2 mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Gondolf VM, et al.
A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
BMC Plant Biol., 2014. 14: p. 344
[PMID:25492673] - Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
GM Crops Food, 2014. 5(4): p. 302-20
[PMID:25523176] - Yuan Y,Teng Q,Zhong R,Ye ZH
TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
Plant Cell Physiol., 2016. 57(1): p. 35-45
[PMID:26556650] - Yang C, et al.
Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
Plant Physiol., 2017. 175(1): p. 333-350
[PMID:28724622] - Pascual MB, et al.
PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
[PMID:29055073] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
PLoS Genet., 2019. 15(1): p. e1007928
[PMID:30657769]
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