PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC07G25110.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 483aa MW: 51522.3 Da PI: 5.6927

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G25110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7e-39	105	164	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s OPUNC07G25110.1 105 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSS 164 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	102	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MSMDDLAASP PHPPPPESHV PPQPQPQPPE KDSCEDTADM RISEEKPCIE QELDADQTNS 60 SSLNSSSECE NQTLSNDEMT GSESKSEAAQ TEGGGSSGEK VLKKPDKILP CPRCNSMDTK 120 FCYYNNYNIN QPRHFCKSCQ RYWTAGGSMR NLPVGAGRRK SKSSTANCRS ILIPGSNLAA 180 PAGDAPLYQL SIKGDQTTTA VKFVPDSPLC NSMASVLKIG EQSKNAKPTS TAQPRNGETQ 240 TCPASGTTSD SPRNEPVNGA VSGNQNGIVG HSGVTPMHPI PCFPGPPFVY PWSPAWNGIP 300 AMAAPVCPAP AEPANSSDNG STSNVQWSIP PMMPVPGYCG PPITFPVIPS SVWPFISPWP 360 NGAWSSPWLQ PNCSVSASSP TSSSTCSDNG SPVLGKHSRD SKPQGDDKAE KHLWIPKTLR 420 IDDPDEAAKS SIWTTLGIEP GDRSMFRPFQ SKSESREQIS GAARVLQANP AALSRSQSFQ 480 ETT

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MSMDDLAASP PHPPPPESHV PPQPQPQPPE KDSCEDTADM RISEEKPCIE QELDADQTNS  60
SSLNSSSECE NQTLSNDEMT GSESKSEAAQ TEGGGSSGEK VLKKPDKILP CPRCNSMDTK  120
FCYYNNYNIN QPRHFCKSCQ RYWTAGGSMR NLPVGAGRRK SKSSTANCRS ILIPGSNLAA  180
PAGDAPLYQL SIKGDQTTTA VKFVPDSPLC NSMASVLKIG EQSKNAKPTS TAQPRNGETQ  240
TCPASGTTSD SPRNEPVNGA VSGNQNGIVG HSGVTPMHPI PCFPGPPFVY PWSPAWNGIP  300
AMAAPVCPAP AEPANSSDNG STSNVQWSIP PMMPVPGYCG PPITFPVIPS SVWPFISPWP  360
NGAWSSPWLQ PNCSVSASSP TSSSTCSDNG SPVLGKHSRD SKPQGDDKAE KHLWIPKTLR  420
IDDPDEAAKS SIWTTLGIEP GDRSMFRPFQ SKSESREQIS GAARVLQANP AALSRSQSFQ  480
ETT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK104095	0.0	AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647890.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0LPX4	0.0	A0A0E0LPX4_ORYPU; Uncharacterized protein
STRING	OPUNC07G25110.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-77	cycling DOF factor 2