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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G22520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 318aa MW: 35147.7 Da PI: 7.4526 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.9 | 2.2e-35 | 38 | 130 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ll OPUNC07G22520.1 38 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLA 122 9****************************************************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+ks+ OPUNC07G22520.1 123 EIHRRKSS 130 *****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 28 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.1E-58 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.96E-33 | 35 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-19 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.8E-31 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAFLVERCGE MVVSMEMGPH GGGAAAAAAA GKPVPAPFLT KTYQLVDDPC TDHIVSWGED 60 DTTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFRKGAKHL 120 LAEIHRRKSS QPPPPPMPHQ PYHHHLHHHG HHLNPFSPPP PPPPAYHHLI QEEPATTTTT 180 HGVAGDGGGG DFLAALSEDN RQLRRRNSLL LSELAHMKKL YNDIIYFLQN HVAPVTTTTP 240 SSTSTMAAAQ HYLPGAGAAC AAPAPSCRLM ELDSPDHSPP PPLKTPTDGG DTVKLFGVSL 300 HGRKKRAHRD DERDVVHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-22 | 27 | 127 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-22 | 27 | 127 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-22 | 27 | 127 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063952 | 0.0 | AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence. | |||
GenBank | AY344494 | 0.0 | AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645691.1 | 1e-149 | heat stress transcription factor B-4b | ||||
Swissprot | Q7XHZ0 | 1e-150 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | A0A0E0LNY0 | 0.0 | A0A0E0LNY0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G22520.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 6e-64 | heat shock transcription factor B4 |
Publications ? help Back to Top | |||
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