PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC07G21080.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1073aa MW: 121544 Da PI: 7.6186

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G21080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.1	8.5e-15	21	73	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A+++gLt +qV++WF+ rR ke++ OPUNC07G21080.1 21 TKKSPLQIQMLERFYSEVQYPQSEDIAEYASSVGLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-15	13	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.111	14	74	IPR001356	Homeobox domain
SMART	SM00389	3.5E-15	16	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.99E-13	16	79	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-12	21	73	IPR001356	Homeobox domain
CDD	cd00086	1.32E-8	21	64	No hit	No description
Pfam	PF15612	1.9E-5	577	608	IPR028942	WHIM1 domain
Pfam	PF15613	6.8E-11	700	771	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence Send to blast
MAAVRQMAAN GLAAKRENSG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA SSVGLTYNQV 60 RIWFKERRRK ERREMESLGA HMEKQLSARS NGFRCSSSRS SSFSGSTMYR TVSLRPEDDR 120 YVDKGMSFTG EKHTLRSQVL FPKDYILRKV FRKDDTTDYH FYQNQRVIKK RKIVEPTTQR 180 SSLPCGDSGP VRKHGVGKGL MTVWHAMYSH GSKIQDGSNF IDETGCLRSL RPLDDCGRIE 240 DCDDGKLIQK KVLARKKVDK RTRPPSNKRK VPCSRVTAPK KHPPMECHLS VDESQSSVLQ 300 ANQVTLVDDE ELELRELQAG PNPLRCSAHL SSSGRHGCPL CKDLLSRFPP SSVKMKQPFS 360 TRPWESSPEM VKKLFQVVRF IYNRFGYMDV HPFTFDELAQ AFHDKVREQE FDMNFWIKSL 420 NSLTWVEILR QEKNQMVKYG LRPRTLKGEL FALLSKKGSG GLKVSELAKS PEIVDLNISS 480 TEVEQLIYST LSSDITLFEK IAPSAYRLRV DPRIKGKEDS GSDTEDCGSV DDDSGADESD 540 GSHEMSFSEH EHRILRRKPK NGYENVNRCS EIDESYSGER WLLGLMEGEY SDLSIDEKLD 600 CLVALMDVVS GADSAPRLEE PPRVVPSILR AQPHVSGGKI KKSTRNICQS SDECFNTSGS 660 MYGLDSSMHE QSRSLRSRDY VAYSGRNDSS TGIAHQPQVV LLGSDRRYNN YWLFLGPCRT 720 DDPGHRRVYF ESSEDGHWEV IDSPQELLSL LASLDSRGTR EAYLLASMKK RQTCLFEAMK 780 KHYENRDAVQ PAMPSDTSHS ETSSGDGASP KLSSGDGASP TSDIDNASVP TNPAENIINA 840 SSAIAIEVGR RGDEKMLKWE RSQAFDKWIW TSFYSCLTAV KCGKKSFKES LVRCESCHDL 900 YWRDEKHCRI CHSTFEVSFD LEERYAIHVA TCRDPEDVYD VPNHKVLPSQ LQALKAAIHA 960 IEAHMPEAAF AGLWMKSSHK LWVKRLRRTS SLAELLQVLV DFVGAMDEDW LYKSSSSVSF 1020 CSYLDDIVIY FQTMPQTTSA VALWVVKLDA LITPYLERAD SDRALGKENA SMR

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence Send to blast

MAAVRQMAAN GLAAKRENSG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA SSVGLTYNQV  60
RIWFKERRRK ERREMESLGA HMEKQLSARS NGFRCSSSRS SSFSGSTMYR TVSLRPEDDR  120
YVDKGMSFTG EKHTLRSQVL FPKDYILRKV FRKDDTTDYH FYQNQRVIKK RKIVEPTTQR  180
SSLPCGDSGP VRKHGVGKGL MTVWHAMYSH GSKIQDGSNF IDETGCLRSL RPLDDCGRIE  240
DCDDGKLIQK KVLARKKVDK RTRPPSNKRK VPCSRVTAPK KHPPMECHLS VDESQSSVLQ  300
ANQVTLVDDE ELELRELQAG PNPLRCSAHL SSSGRHGCPL CKDLLSRFPP SSVKMKQPFS  360
TRPWESSPEM VKKLFQVVRF IYNRFGYMDV HPFTFDELAQ AFHDKVREQE FDMNFWIKSL  420
NSLTWVEILR QEKNQMVKYG LRPRTLKGEL FALLSKKGSG GLKVSELAKS PEIVDLNISS  480
TEVEQLIYST LSSDITLFEK IAPSAYRLRV DPRIKGKEDS GSDTEDCGSV DDDSGADESD  540
GSHEMSFSEH EHRILRRKPK NGYENVNRCS EIDESYSGER WLLGLMEGEY SDLSIDEKLD  600
CLVALMDVVS GADSAPRLEE PPRVVPSILR AQPHVSGGKI KKSTRNICQS SDECFNTSGS  660
MYGLDSSMHE QSRSLRSRDY VAYSGRNDSS TGIAHQPQVV LLGSDRRYNN YWLFLGPCRT  720
DDPGHRRVYF ESSEDGHWEV IDSPQELLSL LASLDSRGTR EAYLLASMKK RQTCLFEAMK  780
KHYENRDAVQ PAMPSDTSHS ETSSGDGASP KLSSGDGASP TSDIDNASVP TNPAENIINA  840
SSAIAIEVGR RGDEKMLKWE RSQAFDKWIW TSFYSCLTAV KCGKKSFKES LVRCESCHDL  900
YWRDEKHCRI CHSTFEVSFD LEERYAIHVA TCRDPEDVYD VPNHKVLPSQ LQALKAAIHA  960
IEAHMPEAAF AGLWMKSSHK LWVKRLRRTS SLAELLQVLV DFVGAMDEDW LYKSSSSVSF  1020
CSYLDDIVIY FQTMPQTTSA VALWVVKLDA LITPYLERAD SDRALGKENA SMR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRRKERRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646956.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0E0LNF7	0.0	A0A0E0LNF7_ORYPU; Uncharacterized protein
STRING	OPUNC07G21080.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator