 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC07G19460.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LBD |
| Protein Properties |
Length: 237aa MW: 24421.7 Da PI: 6.7172 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC07G19460.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 91.8 | 8.2e-29 | 18 | 118 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg++++++++l+q
OPUNC07G19460.1 18 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSAGSWHLCQ 111
6*********************9999888999************************************************************** PP
DUF260 90 lkaelal 96
++++++l
OPUNC07G19460.1 112 AAVDTVL 118
*999876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MAELEVEAVS VWATSAMSCN GCRVLRKGCS EGCVLRPCLQ WIDGAEAQGH ATVFVAKFFG 60
RAGLMSFLTA VPEPQRAAVF QSLLYEAAGR TINPVGGAVG LLSAGSWHLC QAAVDTVLRG 120
GGIQPLPDQV DAAAGGRDVF ASTGRRAVGG CSTFSTAKRS TMTTKNPGTV HDAAAAPQPE 180
PSCDLGLWLS PCSPPAPGDR RSGGRRAGTP SMNSEGSITT CGDGAGEREP ELLNLFV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK069813 | 0.0 | AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence. |
