PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G18550.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 309aa    MW: 32907.6 Da    PI: 7.4641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G18550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-174797155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr+++ +grWvAeI+d +   ++ r +lg+f ta+ Aa+a+++a++ l+g
  OPUNC07G18550.1 47 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 97
                     79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1947106IPR016177DNA-binding domain
PfamPF008471.1E-114797IPR001471AP2/ERF domain
CDDcd000182.91E-1747105No hitNo description
PROSITE profilePS5103219.84948105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2748105IPR001471AP2/ERF domain
SMARTSM003802.1E-3348111IPR001471AP2/ERF domain
PRINTSPR003679.0E-74960IPR001471AP2/ERF domain
PRINTSPR003679.0E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MELNFQVQPP VFQLQDYCYY YSQEAAAAPA AKPTKPRGRK KGSTSHSKFV GVRQRPSGRW  60
VAEIKDTTQK IRMWLGTFET ADAAARAYDE AARLLRGAEA RTNFAPRISP DCPLAVRIRG  120
LLHHKKLKKA RSAAAATASS SGAASKKRST AAAVATPTIT TTSNSNSDGA DSACGGSSSS  180
SSTDSCDGAV KQGGGGGAPT DVSEVYRPDF GHAGAEEFDS WMFDTAFGQF PALDSFAAVD  240
AVTHPPATAS PEESSAGTPP AEMAEFERIK VERRISASLY AMNGLQEYFD KVFDASACDP  300
FWDLSPLCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-13451041171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037580.0AP003758.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1562_B11.
GenBankAP0038450.0AP003845.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1699_E05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646240.11e-156ethylene-responsive transcription factor ERN1
TrEMBLA0A0E0LMJ10.0A0A0E0LMJ1_ORYPU; Uncharacterized protein
STRINGOPUNC07G18550.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11