PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G18180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 350aa    MW: 38412.5 Da    PI: 8.3026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G18180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06322344223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  OPUNC07G18180.1 322 VCPKCSKAFRDPVLLVEHVERdH 344
                      7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.41E-1459119No hitNo description
Gene3DG3DSA:4.10.1110.106.5E-1368113IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.50370119IPR000058Zinc finger, AN1-type
PfamPF014287.1E-1473111IPR000058Zinc finger, AN1-type
SMARTSM001544.1E-473112IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.4E-10151206IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.19E-9153204No hitNo description
PROSITE profilePS510397.728158205IPR000058Zinc finger, AN1-type
PfamPF014284.6E-8161200IPR000058Zinc finger, AN1-type
SMARTSM001540.073161202IPR000058Zinc finger, AN1-type
SMARTSM003550.8284307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280286307IPR007087Zinc finger, C2H2
SMARTSM003558321344IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767321349IPR007087Zinc finger, C2H2
PROSITE patternPS000280323344IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLLDFVPPHP FDERGLLPSS LPFPSLPLLP AATTGKPPPP AGAESSRRRG ELGPALWSFD  60
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHQCPNA NQKDVTVLIC  120
PLCAKGVRLN PNEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD  180
CTKEHCLKHR FGPDHKCPGP RKPESTFPFG SMLRRSQKAE PRSNSNSSST SSSWWSSSLL  240
TAATSFKSSA EAGMQKLSTA TTQAIQKAKD GISTSSSNSG DLMEQCVQCP ARFSTVGALI  300
EHCEKLHQSN SQPSRTRVTV DVCPKCSKAF RDPVLLVEHV ERDHGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3248180.0HQ324818.1 Oryza sativa Japonica Group clone KCS176H09 zinc finger AN1 and C2H2 domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657863.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B90.0SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0E0LME70.0A0A0E0LME7_ORYPU; Uncharacterized protein
STRINGOPUNC07G18180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]