PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G18060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 649aa    MW: 68611.2 Da    PI: 7.0668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G18060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08276298426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r G C+ Gd+C F+Hg
  OPUNC07G18060.1 276 VPCPNFRRPGGCPSGDSCEFSHG 298
                      79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.0E-864134IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.41E-1365144IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1465145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46767142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.276797IPR002110Ankyrin repeat
CDDcd002044.05E-1269142No hitNo description
SMARTSM002480.0044102134IPR002110Ankyrin repeat
PROSITE profilePS5008812.529102137IPR002110Ankyrin repeat
PROSITE profilePS5010313.995272300IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5273301IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6276299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4304337IPR000571Zinc finger, CCCH-type
SMARTSM0035621308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MGELADLVVV PQPPVAGGRR DRLAALLELA AADDVGGMKG ALAEGGEEAV ELADGVGLWY  60
GRSKAYEART PLMVAATYGS AGVVSLLVGL GCVDVNRRPG VDGATALHCA ASGGSRNAVA  120
VVKLLLAAGA DPATPDSAGR FPANVILAPP ASPDALGDLE VLLGCRRALA VATSVASGSS  180
SPPLSSSPDE GNRSPSSRSS SLSPITVDRG KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DSCEFSHGVF  300
ESWLHPSQYR TRLCKEGAAC ARRICFFAHD EDELRHVPHN SGAGLLSPRA SSSIDMTAAA  360
ALGLLPGSPT RHFAPPPVSP SAGSNGGAAV AHWLQGSRLR SSFNARDAAV DDLGMLLEWE  420
SQYLGALCLP PSSRPQPRLS TGLSIRPTIA PSNLEDMYAS DMAMSPRFPN DQGHSVYSPA  480
HKSALLNKLH QQKGLLSPVN TNRMYSPRAL DPSSLAHSPF GGMSPRSPRT MEPTSPLSAR  540
LPSVGSPRNS SASWGTVGSP MGKVDWGVDS EELVRLRRPA QPGLGEDETD VSWVQSLVSN  600
AELNGKRGEV QGMPGTSALM NRPDLNNQGD LLDQTVIGAW LEQMHLDQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A4e-1123833114118RING finger protein unkempt homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657856.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015647507.10.0zinc finger CCCH domain-containing protein 50
RefseqXP_015647508.10.0zinc finger CCCH domain-containing protein 50
RefseqXP_015695270.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0E0LMD30.0A0A0E0LMD3_ORYPU; Uncharacterized protein
STRINGOPUNC07G18060.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-132CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]