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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G18060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 649aa MW: 68611.2 Da PI: 7.0668 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 276 | 298 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg OPUNC07G18060.1 276 VPCPNFRRPGGCPSGDSCEFSHG 298 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12796 | 3.0E-8 | 64 | 134 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.41E-13 | 65 | 144 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-14 | 65 | 145 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.467 | 67 | 142 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.27 | 67 | 97 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 4.05E-12 | 69 | 142 | No hit | No description |
SMART | SM00248 | 0.0044 | 102 | 134 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.529 | 102 | 137 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 13.995 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-4 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 276 | 298 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-6 | 276 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 304 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MGELADLVVV PQPPVAGGRR DRLAALLELA AADDVGGMKG ALAEGGEEAV ELADGVGLWY 60 GRSKAYEART PLMVAATYGS AGVVSLLVGL GCVDVNRRPG VDGATALHCA ASGGSRNAVA 120 VVKLLLAAGA DPATPDSAGR FPANVILAPP ASPDALGDLE VLLGCRRALA VATSVASGSS 180 SPPLSSSPDE GNRSPSSRSS SLSPITVDRG KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DSCEFSHGVF 300 ESWLHPSQYR TRLCKEGAAC ARRICFFAHD EDELRHVPHN SGAGLLSPRA SSSIDMTAAA 360 ALGLLPGSPT RHFAPPPVSP SAGSNGGAAV AHWLQGSRLR SSFNARDAAV DDLGMLLEWE 420 SQYLGALCLP PSSRPQPRLS TGLSIRPTIA PSNLEDMYAS DMAMSPRFPN DQGHSVYSPA 480 HKSALLNKLH QQKGLLSPVN TNRMYSPRAL DPSSLAHSPF GGMSPRSPRT MEPTSPLSAR 540 LPSVGSPRNS SASWGTVGSP MGKVDWGVDS EELVRLRRPA QPGLGEDETD VSWVQSLVSN 600 AELNGKRGEV QGMPGTSALM NRPDLNNQGD LLDQTVIGAW LEQMHLDQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5elk_A | 4e-11 | 238 | 331 | 14 | 118 | RING finger protein unkempt homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003866 | 0.0 | AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657856.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 50 | ||||
Refseq | XP_015647507.1 | 0.0 | zinc finger CCCH domain-containing protein 50 | ||||
Refseq | XP_015647508.1 | 0.0 | zinc finger CCCH domain-containing protein 50 | ||||
Refseq | XP_015695270.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 50 | ||||
Swissprot | Q84SL2 | 0.0 | C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50 | ||||
TrEMBL | A0A0E0LMD3 | 0.0 | A0A0E0LMD3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G18060.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 1e-132 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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