PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G16850.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 447aa    MW: 49786.9 Da    PI: 5.1232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G16850.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-0563102555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + e+ErrRR r+N  ++ Lr ++ k            ++L  A+e+Ik+Lq
  OPUNC07G16850.3  63 NLEAERRRRGRLNGNIFALRAVMSKE-----------ATLSDAIEHIKNLQ 102
                      5689*****************99886...........6***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-957119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-564112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-564107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.25.10.102.9E-32334446IPR011989Armadillo-like helical
PfamPF032242.2E-28337446No hitNo description
SuperFamilySSF483713.05E-24341446IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0000221Cellular Componentvacuolar proton-transporting V-type ATPase, V1 domain
GO:0000325Cellular Componentplant-type vacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009507Cellular Componentchloroplast
GO:0046961Molecular Functionproton-transporting ATPase activity, rotational mechanism
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPRRARARGS GGGGGEEVKV EDDFVDSVLN FGGGGREEDG DDGEEQQQQA AAAAVGKEFK  60
SKNLEAERRR RGRLNGNIFA LRAVMSKEAT LSDAIEHIKN LQNEALELQR QLADSPGEAW  120
EKQGSASCSE SFVPTENTHY QGQVELISLG SCKYNLKIFW TKRAGLFTKV LEALCSYKVQ  180
VLSLNTISFY GYAESFFNIE VKGEQDVVMV ELRSLLSSIV ESKTEGEKER KTNNLAGNSR  240
CPTPPPPVHP TAETPPERLL LLLLLLLRPP AAAAALHRDE ETRREQQTIE EEDICFEIRG  300
DRWKAGAAGH DSSTWPCGRG THTHKDSATR GIAAMDHAEL TTEQVLKRDI PWESYMANKL  360
ISGTCLQLLR RYDHKPESQR GPLLDEDGPS YVRVFLNILR NISKEDTVEY VLALIDEMLA  420
VNPKRAALFY DKSLSGEDIY DPFLNCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2425160.0AK242516.1 Oryza sativa Japonica Group cDNA, clone: J080312F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LLZ50.0A0A0E0LLZ5_ORYPU; Uncharacterized protein
STRINGOPUNC07G16850.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.17e-16bHLH family protein