PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G12320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 266aa MW: 27828.8 Da PI: 4.5557 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.8 | 1.8e-23 | 177 | 221 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e OPUNC07G12320.1 177 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 221 69************************************9998875 PP | |||||||
2 | QLQ | 54.3 | 4.1e-19 | 111 | 146 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k OPUNC07G12320.1 111 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 146 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 110 | 146 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.3E-12 | 111 | 145 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 111 | 146 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.302 | 177 | 221 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 178 | 216 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MAAEGEAKKD NARNPPGGDG GGGGGEEEED NSLAVGEAAV GEGEAGEGGG GEKAADREGK 60 EDVEEGGVCK DLVLVDDAVP VEDPEEAAAT AALQEEMKAL VASVPVGAGA AFTAMQLQEL 120 EQQSRVYQYM AARVPVPTHL VFPIWKSVTG ASSEGAQKYP TLMGLATLCL DFGKNPEPEP 180 GRCRRTDGKK WRCWRNAIAN EKYCERHMHR GRKRPVQLVV EDDEPDSTSG SKSASGKATE 240 GGKKTDDKSS SSKKLAVAAP AAVEST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066400 | 0.0 | AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644678.1 | 1e-150 | growth-regulating factor 11 | ||||
Swissprot | Q6AWX8 | 1e-151 | GRF11_ORYSJ; Growth-regulating factor 11 | ||||
TrEMBL | A0A0E0LKD2 | 0.0 | A0A0E0LKD2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G12320.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-29 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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