PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G05200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 930aa    MW: 102571 Da    PI: 6.2645
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G05200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15130227199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+l++sd+  ++r+  p   a++      + k  ++  l+++d++g  +++ +   ++++r++l kGWk+F ++ +  +gD+v+F+  +r +
  OPUNC07G05200.1 130 FVKTLMSSDADYRNRFAAPMFVAKDVfpplvDAKAVQP--LVVKDLQGSPMTFDY--GRNGSRVTLVKGWKKFQDDMDFVDGDSVIFM--RRGD 217
                      89***************999999888**9986666676..***************..*******************************..4577 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                       el+v+v+r+
  OPUNC07G05200.1 218 DELYVGVRRR 227
                      888****996 PP
2B349.86.2e-16493591198
                      EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                      f+k lt  d+ k+  r+++pkk a      +++++ ++ l+++d++g +W ++++++ + ++  +++GW +F +an+L +gD vvF+  +r ++
  OPUNC07G05200.1 493 FVKPLTYTDAVKNrYRFIIPKKDAVMGvlpQLEQNDDVLLRIKDTDGMEWVFNYTWKEHTRM--FRSGWIKFTNANRLVTGDNVVFM--RRiDN 582
                      6667765555555489********7779**8889999*****************87777755..9**********************..67789 PP

                      E..EEEEE- CS
               B3  90 felvvkvfr 98 
                      +e +++++r
  OPUNC07G05200.1 583 GEIFMGLRR 591
                      989998887 PP
3Auxin_resp22.54.9e-09609684482
       Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+  ++F+v+Y  r+   eFvv+++ v++ l  k+++Gm + +    e+ +   +  +G v++++++       S Wr++
  OPUNC07G05200.1 609 KAARLKPFKVTYTSRQDGDEFVVPCDIVLHGLLAKFTPGMVVNFVWAAEEGKLPIIgpQGKVIAIENY-----ATSIWRMI 684
                      567789***********************************99999999887777677*******995.....55788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-18122227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-17125232IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-11128226No hitNo description
SMARTSM010192.3E-8130228IPR003340B3 DNA binding domain
PfamPF023621.4E-12130227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025130228IPR003340B3 DNA binding domain
PfamPF065078.4E-6255332IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.104.5E-18487591IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15489590IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-14492591No hitNo description
SMARTSM010196.0E-7493592IPR003340B3 DNA binding domain
PfamPF023621.7E-12493591IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647494593IPR003340B3 DNA binding domain
PfamPF065078.7E-6610684IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MAAAPPPLAD DINRITVTCG SHAPPRTPAA SPPVGSVVFY FVDGHAEQFC QFPAPLLEQL  60
AVPPAPRFFL CTVADVRLRA DALTNEAYAA ITLDPVGDHD IPRLAPASAV PAAAAAAGGQ  120
QQQQQQFRSF VKTLMSSDAD YRNRFAAPMF VAKDVFPPLV DAKAVQPLVV KDLQGSPMTF  180
DYGRNGSRVT LVKGWKKFQD DMDFVDGDSV IFMRRGDDEL YVGVRRRCTL DKPLNTLRSR  240
PTTPLQVAVQ EVIAAAAHAA AGEQFTVTYR SRQDGDEFVV PREVVEEGLR LRARFTPEME  300
VEFVWAVEDG APPSVGPQGM ITAMDDTTRM WRALEIGWTG NSKMNKRANF WQVRSVRYGD  360
RASAAPPPPP SPKRAAAAAA EGSPSSSAQA QAFNVTRDMW LACAAPKSGR LPAVGSLVYY  420
FPDGHAEQCP SRPPEPLPGR IFLCKVTEVH LCATRNEPMA TISLVPVAAD DHSLQLQAPA  480
DPSSTPPQNL VSFVKPLTYT DAVKNRYRFI IPKKDAVMGV LPQLEQNDDV LLRIKDTDGM  540
EWVFNYTWKE HTRMFRSGWI KFTNANRLVT GDNVVFMRRI DNGEIFMGLR RTLKPELGSV  600
EEVIDAVWKA ARLKPFKVTY TSRQDGDEFV VPCDIVLHGL LAKFTPGMVV NFVWAAEEGK  660
LPIIGPQGKV IAIENYATSI WRMIQVEWAS SSEMNRYVNF WQIREVPGES SSQTSTCILN  720
TQNYSPAPDR NTVHALQLPE GTRQLQHNKK SVSSSSTEEL PTFRLFGQEM TPGVPPRRDG  780
ASGQASLFSH YLLKDEDELV PTMRKRLEAL LPDSTRSPAP TFHTLPSFLV SVAAPAVAKA  840
SDLYCEEPDR DDDDGLAAIL HDAWELPTRP VLRNFNGATF LSKPWLALAV DGHNVVAEPQ  900
RLMPGLLLPE EMALDPASRA FLSLADGRFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-253271419361Auxin response factor 1
4ldy_B8e-253271419361Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882777.10.0B3 domain-containing protein Os07g0183300/Os07g0183600
SwissprotQ8H5060.0Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLA0A0E0LHW70.0A0A0E0LHW7_ORYPU; Auxin response factor
STRINGOPUNC07G05200.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.41e-26auxin response factor 2