 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC07G05190.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
ARF |
| Protein Properties |
Length: 221aa MW: 24425.8 Da PI: 9.5734 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC07G05190.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 74.4 | 1.3e-23 | 22 | 126 | 1 | 99 |
EEEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesg.rsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+k+l+ sdv+++ +++v+pk+ a+eh+++ + +l+++d++g r+We+ +++ + +++++ ++GW+ Fvka++L++gD+v+F+ +
OPUNC07G05190.1 22 FDKKLSESDVTANggggALIVIPKSSAAEHDHVLPAIPDLRVTDLHGgRRWEFGHTWsdtDTERSHTLAAAGWSAFVKAKRLCVGDTVIFM--R 113
89***********8888889**********555444449*****8877*********8754444457778*********************..6 PP
SSEE..EEEEE-S CS
B3 87 rsefelvvkvfrk 99
r ++el+v+v+rk
OPUNC07G05190.1 114 RPGGELLVGVRRK 126
7**********98 PP
|
| 2 | Auxin_resp | 51.5 | 4.3e-18 | 150 | 220 | 8 | 83 |
Auxin_resp 8 ksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83
+ +F+ +Y+P+++t+eFvv++e+ve + +++++G+R+++ ++ ++ ++r + +Gtv++v +S Wr+L+
OPUNC07G05190.1 150 GHPFRATYCPWQGTAEFVVRREEVEGSPPISLTPGTRVRLLMNPDNTRRRVQpvYGTVRDVDS-------RSAWRMLE 220
789*******************************************99998888999988877.......89999985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MHRPLPARDP VGIGGQREFC FFDKKLSESD VTANGGGGAL IVIPKSSAAE HDHVLPAIPD 60
LRVTDLHGGR RWEFGHTWSD TDTERSHTLA AAGWSAFVKA KRLCVGDTVI FMRRPGGELL 120
VGVRRKPYGG MPVGIPDKHV SDAGFYATLG HPFRATYCPW QGTAEFVVRR EEVEGSPPIS 180
LTPGTRVRLL MNPDNTRRRV QPVYGTVRDV DSRSAWRMLE V
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 2e-12 | 22 | 221 | 124 | 333 | Auxin response factor 1 |
| 4ldw_A | 2e-12 | 22 | 221 | 124 | 333 | Auxin response factor 1 |
| 4ldw_B | 2e-12 | 22 | 221 | 124 | 333 | Auxin response factor 1 |
| 4ldx_A | 2e-12 | 22 | 221 | 124 | 333 | Auxin response factor 1 |
| 4ldx_B | 2e-12 | 22 | 221 | 124 | 333 | Auxin response factor 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003835 | 0.0 | AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02. |
| GenBank | AP003861 | 0.0 | AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10. |
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
