PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 286aa MW: 31247.9 Da PI: 7.2778 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H OPUNC07G00110.1 61 YTCSFCRREFRSAQALGGHMNVH 83 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-6 | 58 | 88 | No hit | No description |
Pfam | PF13912 | 1.8E-5 | 61 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.219 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MERMAKHYWA LWGAGSGAGV RSGWPAAHGG GGGAEPSWEE KAFAQDAAGH LGGCVWPPRS 60 YTCSFCRREF RSAQALGGHM NVHRRDRARL RQCDDDDEPI PPIVSICAPP PPPAPADSPS 120 LLLQISSPKS TTADHHQNQQ LHVKGTNSSP NSCIATIIKE SRNKARLFIT TMPADHAATT 180 DLGLGGGDYG KDKEEEEDSI SMEENIMRRK RRRVDQRPLT PTVASCERDQ VRRREDDDPA 240 AASRNNNNKV ITSPNSSSIL VHQLAMDMVG RQEVDLELRL GTSTPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 56 | 83 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 56 | 83 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 212 | RKRRR |
2 | 209 | 213 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005869 | 1e-127 | AP005869.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1026C12. | |||
GenBank | AP014963 | 1e-127 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645557.1 | 1e-111 | zinc finger protein 10 | ||||
TrEMBL | A0A0E0LG25 | 0.0 | A0A0E0LG25_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G00110.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 7e-25 | zinc-finger protein 10 |