PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC06G25570.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 195aa MW: 21255.6 Da PI: 6.6449

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G25570.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6e-06	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+++F++ + H+r+H OPUNC06G25570.1 61 YPCPLCDRHFPTEKAVHGHMRSH 83 99********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.055	61	88	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.2E-6	61	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0013	61	83	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.87E-6	61	133	No hit	No description
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.3E-8	110	135	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.4	111	133	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.284	111	138	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGGQVFVHHH ALGGSVAGGS GGDDPTHPWL SLKSAHEMDA VASWREKLAD MAAAGERAAR 60 YPCPLCDRHF PTEKAVHGHM RSHPGRGWRG MEPPREPSPG DLAADGKWYR YVCDRCKAPF 120 ETRQALGGHR ASHSSKKGCS WHAKQRAMEM AEAAAKPPKN DFDLNDLSLE AIQAAQEEEA 180 AAAAEEEKED KEPNN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108097	1e-154	AK108097.1 Oryza sativa Japonica Group cDNA clone:002-139-A09, full insert sequence.
GenBank	AP004685	1e-154	AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10.
GenBank	AP014962	1e-154	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642837.1	8e-98	zinc finger protein ZAT2
TrEMBL	A0A0E0LFV6	1e-140	A0A0E0LFV6_ORYPU; Uncharacterized protein
STRING	OPUNC06G25570.1	1e-141	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	8e-14	C2H2-like zinc finger protein