PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G24910.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 297aa MW: 31143.7 Da PI: 4.6878

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G24910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.9	1.6e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ +++ C ++ lC C H+ H++ pl OPUNC06G24910.1 4 QCDVCGAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47 7*****************************76889999988775 PP
2	zf-B_box	27.2	7.8e-09	59	101	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +++ C+ ++ek+ fC +++ lC+dC + +H+ Ht OPUNC06G24910.1 59 DAPLCDVCKEKRGLVFCVEDRAILCADCDDPIHSAndltakHT 101 5789*****************************6577777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.424	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-9	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.16E-7	3	47	No hit	No description
Pfam	PF00643	2.5E-5	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.57	58	105	IPR000315	B-box-type zinc finger
SMART	SM00336	8.9E-16	58	105	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.8E-6	60	102	IPR000315	B-box-type zinc finger
CDD	cd00021	5.47E-7	61	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MRVQCDVCGA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSDAGDDA 60 PLCDVCKEKR GLVFCVEDRA ILCADCDDPI HSANDLTAKH TRFLLVGAKL SAGALAEHPI 120 PSSDCSSDDD AATTEEYHSS AASTGAVTAP LDASSNGAGG GGVGESSISD YLTTICPGWR 180 VEDLLPDDDA FTAAAAQAGK EKDERVPFLD ADLFDVVAGR PEKGGAWAPH VPQLPAWCLD 240 EVPVVAASAA PAATPVKAKQ VHVRDSHWSD SDAFAVPEFS PPPAAKRARP SSQFWCF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB001884	0.0	AB001884.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1479.
GenBank	AK105957	0.0	AK105957.1 Oryza sativa Japonica Group cDNA clone:001-205-D08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641370.1	1e-131	B-box zinc finger protein 20 isoform X1
TrEMBL	A0A0E0LFL4	0.0	A0A0E0LFL4_ORYPU; Uncharacterized protein
STRING	OPUNC06G24910.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12100	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	4e-42	salt tolerance homolog2