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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC06G24320.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
SBP |
Protein Properties |
Length: 504aa MW: 53914.3 Da PI: 8.4954 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC06G24320.2 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 129.3 | 1.4e-40 | 210 | 286 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
CqvegC++dls+ +eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+
OPUNC06G24320.2 210 CQVEGCKVDLSSSREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 286
**************************************************************************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 504 aa
Download sequence Send
to blast |
MAIVFIQVEY NGDNDSLSAK GAAVEILNSV MASFGMNWNQ KSPVFWDWEN PAPFGPNTME 60 NPKSIPHPEP RGVVVGAANH GSTNSSGGTF TSSSELANGS SKSSLSASFD SSSKLGNSLE 120 FRFASVKGHG KNMCKDGEAG RVEDSGTSPA VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK 180 SSSAASAVTC PSTVVKKMKV SQQSTQSSYC QVEGCKVDLS SSREYHRKHK VCEAHSKAPK 240 VIVSGLERRF CQQCSRFHGL AEFDQKKKSC RRRLSDHNAR RRKPQQEAIS FGSSRLASMF 300 YDARQQTDIY FGQSPFGQVR SNAISSCDNL GGFKFTEAKL PWMKPMKTIG LEDLHFSTVQ 360 MPNNVVAHTV HHHDFDGLIP FKGNTTKVLN QGVDPACAVV SSNSNGAPDL RRALSLLSSD 420 SWGPADVQAG SQVHPGGVMP LLAVAATVTA PTNSVSVMHA LHPSPGGGGF WQDDDDPAPL 480 DHGVQAQAFM HLGNGSNSGF GNLH
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 265 | 282 | KKKSCRRRLSDHNARRRK |
Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK073179 | 0.0 | AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence. |
GenBank | AK102136 | 0.0 | AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence. |